MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.6 nTPM
HPA Brain:32.1 nTPM
GTEx:9.6 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:9.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.2
2411 Female, age 72, unknown 35.2
2019 Male, age 18, unknown 34.9
1833 Male, age 53, unknown 32.9
1830 Male, age 51, unknown 31.9
1827 Male, age 72, unknown 31.2
1870 Female, age 42, unknown 30.5
2586 Male, age 75, left hemisphere 27.7
2828 Female, age 72, unknown 27.0
2666 Male, age 74, left hemisphere 26.8
2219 Male, age 76, both hemispheres 24.0
Dorsal raphe nucleus
nTPM: 26.9
2750 Male, age 76, both hemispheres 29.6
2047 Male, age 72, unknown 27.9
2298 Female, age 72, unknown 27.5
1828 Male, age 53, unknown 24.9
2016 Female, age 72, unknown 24.5
Inferior colliculus
nTPM: 29.6
2097 Female, age 72, unknown 33.7
1890 Male, age 53, unknown 28.8
1848 Female, age 42, unknown 28.6
2849 Male, age 72, unknown 27.3
Median raphe nucleus
nTPM: 32.1
2220 Male, age 76, midline 32.1
Periaquaductal grey, anterior
nTPM: 27.4
2502 Female, age 75, unknown 29.3
1947 Male, age 18, unknown 28.7
1795 Male, age 51, unknown 24.3
Periaquaductal grey, dorsal
nTPM: 26.2
2464 Female, age 72, unknown 27.6
1840 Male, age 53, unknown 27.1
1831 Male, age 72, unknown 26.5
2850 Male, age 76, both hemispheres 23.8
Periaquaductal grey, lateral
nTPM: 26.1
2053 Male, age 18, unknown 29.8
2272 Male, age 74, both hemispheres 25.6
2140 Male, age 76, both hemispheres 23.0
Pretectal area
nTPM: 32.1
2007 Male, age 72, unknown 37.4
1816 Male, age 51, unknown 36.7
1817 Female, age 42, unknown 36.5
1944 Female, age 72, unknown 36.0
1815 Male, age 53, unknown 35.2
2407 Male, age 75, both hemispheres 33.6
2667 Female, age 75, unknown 29.3
2224 Female, age 72, unknown 28.9
2316 Male, age 76, right hemisphere 28.4
2825 Male, age 18, unknown 26.1
2273 Male, age 74, both hemispheres 25.4
Red nucleus
nTPM: 31.1
1821 Female, age 72, unknown 35.5
2823 Male, age 76, right hemisphere 33.1
2725 Female, age 75, unknown 32.8
2584 Male, age 75, left hemisphere 32.1
2588 Male, age 74, left hemisphere 31.9
2785 Male, age 18, unknown 31.4
1865 Male, age 51, unknown 31.3
1904 Male, age 53, unknown 31.3
1954 Female, age 42, unknown 29.9
2503 Female, age 72, unknown 28.8
2769 Male, age 72, unknown 27.8
2227 Male, age 72, unknown 27.2
Substantia nigra
nTPM: 26.7
1889 Female, age 72, unknown 33.8
2583 Male, age 75, right hemisphere 32.9
2241 Male, age 72, unknown 28.3
2590 Female, age 75, unknown 26.7
1851 Male, age 51, unknown 25.8
1941 Male, age 53, unknown 25.8
1916 Female, age 42, unknown 25.3
2409 Female, age 72, unknown 23.7
2665 Male, age 74, both hemispheres 23.3
2699 Male, age 18, unknown 21.2
Superior colliculus
nTPM: 29.5
1895 Male, age 76, right hemisphere 33.1
2087 Female, age 72, unknown 32.7
2261 Male, age 18, unknown 31.4
1913 Female, age 42, unknown 31.0
1995 Male, age 72, unknown 29.3
1839 Male, age 51, unknown 29.2
2587 Male, age 74, left hemisphere 28.1
2668 Female, age 75, unknown 28.0
1796 Male, age 53, unknown 27.2
2664 Male, age 75, both hemispheres 25.3
Ventral tegmental area
nTPM: 27.9
2410 Female, age 72, unknown 31.1
2223 Female, age 72, unknown 30.7
2218 Male, age 76, both hemispheres 27.1
2021 Male, age 53, unknown 26.9
1942 Male, age 51, unknown 26.2
1915 Female, age 42, unknown 25.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.6
Samples: 139

Max nTPM: 17.6
Min nTPM: 5.3
Std nTPM: 2.2
Median nTPM: 9.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 17.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 16.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 15.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 15.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 14.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 14.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 13.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 13.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 13.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 13.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 13.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.5
FF:10158-103A5 76 years, female 18.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.3
Samples: 4

Max nTPM: 16.9
Min nTPM: 12.9
Sample A Female 15.5
Sample B Female 16.0
Sample C Male 16.9
Sample D Male 12.9
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 19.4
Min nTPM: 13.4
Sample A Female 14.8
Sample B Female 15.1
Sample C Male 19.4
Sample D Male 13.4
Periaqueductal gray
nTPM: 14.7
Samples: 3

Max nTPM: 15.4
Min nTPM: 13.4
Sample B Female 15.2
Sample C Male 15.4
Sample D Male 13.4
Superior colliculi
nTPM: 13.4
Samples: 4

Max nTPM: 13.9
Min nTPM: 12.4
Sample A Female 13.9
Sample B Female 12.4
Sample C Male 13.6
Sample D Male 13.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.9
Samples: 4

Max nTPM: 10.3
Min nTPM: 9.1
Sample A Male 9.1
Sample B Male 10.3
Sample C Female 10.3
Sample D Female 10.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70787414 Antisense, RP_050706_04_B09, Mouse strain C57BL/6J (56 days, male) 0.1

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