MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.7 nTPM
HPA Brain:97.9 nTPM
GTEx:62.7 nTPM
FANTOM5:76.8 Scaled Tags Per Million
Pig:67.8 nTPM
Mouse:18.2 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 97.4
2586 Male, age 75, left hemisphere 119.7
2828 Female, age 72, unknown 107.7
2666 Male, age 74, left hemisphere 100.6
1870 Female, age 42, unknown 98.3
2019 Male, age 18, unknown 95.7
1827 Male, age 72, unknown 94.8
1833 Male, age 53, unknown 94.3
1830 Male, age 51, unknown 90.2
2411 Female, age 72, unknown 89.7
2219 Male, age 76, both hemispheres 83.5
Dorsal raphe nucleus
nTPM: 87.1
2750 Male, age 76, both hemispheres 93.1
2016 Female, age 72, unknown 92.1
2298 Female, age 72, unknown 84.6
1828 Male, age 53, unknown 84.3
2047 Male, age 72, unknown 81.2
Inferior colliculus
nTPM: 81.7
2849 Male, age 72, unknown 89.9
1848 Female, age 42, unknown 81.4
1890 Male, age 53, unknown 80.7
2097 Female, age 72, unknown 74.6
Median raphe nucleus
nTPM: 84.1
2220 Male, age 76, midline 84.1
Periaquaductal grey, anterior
nTPM: 96.6
2502 Female, age 75, unknown 101.0
1795 Male, age 51, unknown 96.0
1947 Male, age 18, unknown 92.8
Periaquaductal grey, dorsal
nTPM: 84.1
2850 Male, age 76, both hemispheres 92.1
1831 Male, age 72, unknown 85.6
1840 Male, age 53, unknown 81.8
2464 Female, age 72, unknown 76.9
Periaquaductal grey, lateral
nTPM: 87.1
2053 Male, age 18, unknown 91.5
2272 Male, age 74, both hemispheres 86.5
2140 Male, age 76, both hemispheres 83.3
Pretectal area
nTPM: 95.2
2407 Male, age 75, both hemispheres 112.2
1815 Male, age 53, unknown 101.4
1816 Male, age 51, unknown 101.4
2007 Male, age 72, unknown 100.8
1817 Female, age 42, unknown 97.2
2825 Male, age 18, unknown 93.4
2667 Female, age 75, unknown 92.5
2316 Male, age 76, right hemisphere 91.6
1944 Female, age 72, unknown 89.6
2273 Male, age 74, both hemispheres 85.0
2224 Female, age 72, unknown 81.8
Red nucleus
nTPM: 96.2
2584 Male, age 75, left hemisphere 108.6
2769 Male, age 72, unknown 103.6
1904 Male, age 53, unknown 101.7
2227 Male, age 72, unknown 100.3
1865 Male, age 51, unknown 95.9
2785 Male, age 18, unknown 94.4
2823 Male, age 76, right hemisphere 93.8
1821 Female, age 72, unknown 93.7
2503 Female, age 72, unknown 93.0
2588 Male, age 74, left hemisphere 92.0
1954 Female, age 42, unknown 88.9
2725 Female, age 75, unknown 88.7
Substantia nigra
nTPM: 88.2
2665 Male, age 74, both hemispheres 107.4
2583 Male, age 75, right hemisphere 101.9
2590 Female, age 75, unknown 93.7
2699 Male, age 18, unknown 93.1
1916 Female, age 42, unknown 92.7
1851 Male, age 51, unknown 91.8
1889 Female, age 72, unknown 89.2
1941 Male, age 53, unknown 75.8
2409 Female, age 72, unknown 74.3
2241 Male, age 72, unknown 62.4
Superior colliculus
nTPM: 97.9
2664 Male, age 75, both hemispheres 124.9
1995 Male, age 72, unknown 110.3
1913 Female, age 42, unknown 108.0
1796 Male, age 53, unknown 100.3
2668 Female, age 75, unknown 95.9
2261 Male, age 18, unknown 94.2
1839 Male, age 51, unknown 91.4
2087 Female, age 72, unknown 88.4
2587 Male, age 74, left hemisphere 85.2
1895 Male, age 76, right hemisphere 80.3
Ventral tegmental area
nTPM: 88.8
2021 Male, age 53, unknown 95.7
2223 Female, age 72, unknown 94.1
1942 Male, age 51, unknown 90.7
2410 Female, age 72, unknown 85.7
1915 Female, age 42, unknown 84.0
2218 Male, age 76, both hemispheres 82.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.7
Samples: 139

Max nTPM: 102.3
Min nTPM: 41.1
Std nTPM: 10.5
Median nTPM: 61.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 102.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 94.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 88.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 88.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 87.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 85.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 83.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 82.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 79.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 78.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 78.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 76.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 76.8
FF:10158-103A5 76 years, female 76.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 67.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 62.6
Samples: 4

Max nTPM: 67.7
Min nTPM: 53.7
Sample A Female 65.0
Sample B Female 53.7
Sample C Male 64.0
Sample D Male 67.7
Midbrain
nTPM: 67.8
Samples: 4

Max nTPM: 99.4
Min nTPM: 53.9
Sample A Female 99.4
Sample B Female 55.7
Sample C Male 62.1
Sample D Male 53.9
Periaqueductal gray
nTPM: 57.7
Samples: 3

Max nTPM: 63.1
Min nTPM: 54.8
Sample B Female 55.1
Sample C Male 63.1
Sample D Male 54.8
Superior colliculi
nTPM: 62.9
Samples: 4

Max nTPM: 72.2
Min nTPM: 53.1
Sample A Female 72.2
Sample B Female 53.1
Sample C Male 61.6
Sample D Male 64.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.2
Samples: 4

Max nTPM: 19.7
Min nTPM: 17.2
Sample A Male 19.7
Sample B Male 17.2
Sample C Female 17.8
Sample D Female 18.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
69735747 Antisense, RP_050503_03_D12, Mouse strain C57BL/6J (56 days, male) 5.2

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