MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.5 nTPM
HPA Brain:185.1 nTPM
GTEx:57.5 nTPM
FANTOM5:165.8 Scaled Tags Per Million
Pig:56.0 nTPM
Mouse:20.6 nTPM
Allen mouse:11.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 185.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 159.2
2411 Female, age 72, unknown 212.0
1830 Male, age 51, unknown 200.3
1833 Male, age 53, unknown 183.1
2019 Male, age 18, unknown 176.8
2666 Male, age 74, left hemisphere 176.6
2828 Female, age 72, unknown 143.1
1827 Male, age 72, unknown 142.7
1870 Female, age 42, unknown 141.4
2219 Male, age 76, both hemispheres 121.7
2586 Male, age 75, left hemisphere 93.8
Dorsal raphe nucleus
nTPM: 124.0
2750 Male, age 76, both hemispheres 194.9
2016 Female, age 72, unknown 117.7
1828 Male, age 53, unknown 116.1
2047 Male, age 72, unknown 106.7
2298 Female, age 72, unknown 84.6
Inferior colliculus
nTPM: 134.4
1890 Male, age 53, unknown 154.4
1848 Female, age 42, unknown 129.5
2097 Female, age 72, unknown 128.8
2849 Male, age 72, unknown 124.9
Median raphe nucleus
nTPM: 108.5
2220 Male, age 76, midline 108.5
Periaquaductal grey, anterior
nTPM: 120.6
2502 Female, age 75, unknown 130.6
1947 Male, age 18, unknown 121.2
1795 Male, age 51, unknown 109.9
Periaquaductal grey, dorsal
nTPM: 100.7
2464 Female, age 72, unknown 135.3
1831 Male, age 72, unknown 118.8
1840 Male, age 53, unknown 80.7
2850 Male, age 76, both hemispheres 68.0
Periaquaductal grey, lateral
nTPM: 99.8
2053 Male, age 18, unknown 116.4
2272 Male, age 74, both hemispheres 105.0
2140 Male, age 76, both hemispheres 77.9
Pretectal area
nTPM: 128.5
2316 Male, age 76, right hemisphere 169.2
2007 Male, age 72, unknown 154.2
1815 Male, age 53, unknown 149.0
1944 Female, age 72, unknown 139.2
1817 Female, age 42, unknown 133.9
2407 Male, age 75, both hemispheres 122.7
2825 Male, age 18, unknown 120.1
1816 Male, age 51, unknown 118.7
2667 Female, age 75, unknown 115.5
2224 Female, age 72, unknown 101.3
2273 Male, age 74, both hemispheres 89.8
Red nucleus
nTPM: 185.1
2823 Male, age 76, right hemisphere 228.0
2588 Male, age 74, left hemisphere 210.9
2503 Female, age 72, unknown 206.2
1904 Male, age 53, unknown 205.0
1865 Male, age 51, unknown 203.0
1821 Female, age 72, unknown 191.2
2785 Male, age 18, unknown 189.1
2769 Male, age 72, unknown 178.3
1954 Female, age 42, unknown 168.5
2227 Male, age 72, unknown 167.5
2725 Female, age 75, unknown 137.5
2584 Male, age 75, left hemisphere 135.5
Substantia nigra
nTPM: 133.9
2409 Female, age 72, unknown 168.5
1889 Female, age 72, unknown 152.9
2665 Male, age 74, both hemispheres 150.4
2583 Male, age 75, right hemisphere 140.9
2590 Female, age 75, unknown 138.4
1941 Male, age 53, unknown 130.6
1851 Male, age 51, unknown 125.9
2241 Male, age 72, unknown 120.0
2699 Male, age 18, unknown 109.3
1916 Female, age 42, unknown 102.1
Superior colliculus
nTPM: 142.3
1895 Male, age 76, right hemisphere 186.2
2668 Female, age 75, unknown 178.5
1913 Female, age 42, unknown 175.2
1995 Male, age 72, unknown 149.8
2587 Male, age 74, left hemisphere 146.7
1839 Male, age 51, unknown 133.1
2087 Female, age 72, unknown 127.6
2261 Male, age 18, unknown 126.2
1796 Male, age 53, unknown 116.1
2664 Male, age 75, both hemispheres 83.5
Ventral tegmental area
nTPM: 133.5
2410 Female, age 72, unknown 173.4
2223 Female, age 72, unknown 165.1
2218 Male, age 76, both hemispheres 126.7
1942 Male, age 51, unknown 117.0
1915 Female, age 42, unknown 109.9
2021 Male, age 53, unknown 109.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.5
Samples: 139

Max nTPM: 135.7
Min nTPM: 18.8
Std nTPM: 22.1
Median nTPM: 52.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 135.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 129.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 123.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 116.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 114.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 112.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 105.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 102.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 96.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 95.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 94.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 165.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 165.8
FF:10158-103A5 76 years, female 165.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.7
Samples: 4

Max nTPM: 62.2
Min nTPM: 42.9
Sample A Female 44.6
Sample B Female 44.9
Sample C Male 42.9
Sample D Male 62.2
Midbrain
nTPM: 56.0
Samples: 4

Max nTPM: 69.3
Min nTPM: 43.1
Sample A Female 65.3
Sample B Female 43.1
Sample C Male 69.3
Sample D Male 46.3
Periaqueductal gray
nTPM: 33.4
Samples: 3

Max nTPM: 38.0
Min nTPM: 30.4
Sample B Female 38.0
Sample C Male 31.9
Sample D Male 30.4
Superior colliculi
nTPM: 49.9
Samples: 4

Max nTPM: 60.5
Min nTPM: 35.0
Sample A Female 48.7
Sample B Female 35.0
Sample C Male 60.5
Sample D Male 55.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.6
Samples: 4

Max nTPM: 21.5
Min nTPM: 19.3
Sample A Male 19.3
Sample B Male 21.0
Sample C Female 21.5
Sample D Female 20.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.2
69059943 Antisense, RP_050317_04_F03, Mouse strain C57BL/6J (56 days, male) 11.2

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