MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.0 nTPM
HPA Brain:64.6 nTPM
GTEx:20.0 nTPM
FANTOM5:13.5 Scaled Tags Per Million
Pig:31.8 nTPM
Mouse:23.4 nTPM
Allen mouse:5.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.5
2586 Male, age 75, left hemisphere 75.5
2219 Male, age 76, both hemispheres 65.8
1827 Male, age 72, unknown 61.6
2666 Male, age 74, left hemisphere 59.3
2828 Female, age 72, unknown 55.7
2019 Male, age 18, unknown 47.1
2411 Female, age 72, unknown 45.1
1830 Male, age 51, unknown 42.2
1870 Female, age 42, unknown 42.2
1833 Male, age 53, unknown 40.6
Dorsal raphe nucleus
nTPM: 45.4
2298 Female, age 72, unknown 50.1
2047 Male, age 72, unknown 47.5
1828 Male, age 53, unknown 46.8
2750 Male, age 76, both hemispheres 45.4
2016 Female, age 72, unknown 37.2
Inferior colliculus
nTPM: 56.0
2849 Male, age 72, unknown 61.5
1848 Female, age 42, unknown 58.6
2097 Female, age 72, unknown 57.3
1890 Male, age 53, unknown 46.6
Median raphe nucleus
nTPM: 47.0
2220 Male, age 76, midline 47.0
Periaquaductal grey, anterior
nTPM: 64.6
2502 Female, age 75, unknown 71.1
1795 Male, age 51, unknown 63.2
1947 Male, age 18, unknown 59.7
Periaquaductal grey, dorsal
nTPM: 51.0
1840 Male, age 53, unknown 52.5
1831 Male, age 72, unknown 52.1
2464 Female, age 72, unknown 50.6
2850 Male, age 76, both hemispheres 48.7
Periaquaductal grey, lateral
nTPM: 47.3
2140 Male, age 76, both hemispheres 53.1
2053 Male, age 18, unknown 52.2
2272 Male, age 74, both hemispheres 36.7
Pretectal area
nTPM: 59.2
1816 Male, age 51, unknown 82.9
1944 Female, age 72, unknown 67.5
2007 Male, age 72, unknown 66.6
1817 Female, age 42, unknown 61.1
2316 Male, age 76, right hemisphere 60.7
1815 Male, age 53, unknown 59.9
2407 Male, age 75, both hemispheres 59.3
2825 Male, age 18, unknown 52.1
2667 Female, age 75, unknown 50.4
2224 Female, age 72, unknown 47.4
2273 Male, age 74, both hemispheres 43.0
Red nucleus
nTPM: 42.3
2584 Male, age 75, left hemisphere 57.6
2785 Male, age 18, unknown 49.4
2588 Male, age 74, left hemisphere 44.3
2823 Male, age 76, right hemisphere 43.7
2769 Male, age 72, unknown 42.1
2227 Male, age 72, unknown 41.7
1954 Female, age 42, unknown 40.6
2503 Female, age 72, unknown 40.4
2725 Female, age 75, unknown 39.3
1821 Female, age 72, unknown 36.8
1904 Male, age 53, unknown 36.4
1865 Male, age 51, unknown 35.6
Substantia nigra
nTPM: 41.3
1941 Male, age 53, unknown 62.8
1889 Female, age 72, unknown 51.9
2583 Male, age 75, right hemisphere 45.8
2665 Male, age 74, both hemispheres 43.9
2590 Female, age 75, unknown 41.0
1851 Male, age 51, unknown 37.9
1916 Female, age 42, unknown 37.2
2699 Male, age 18, unknown 33.9
2241 Male, age 72, unknown 31.8
2409 Female, age 72, unknown 26.4
Superior colliculus
nTPM: 59.6
2664 Male, age 75, both hemispheres 75.1
2261 Male, age 18, unknown 70.9
1796 Male, age 53, unknown 68.9
2087 Female, age 72, unknown 64.7
2668 Female, age 75, unknown 64.3
1895 Male, age 76, right hemisphere 58.9
1839 Male, age 51, unknown 56.4
1913 Female, age 42, unknown 46.6
1995 Male, age 72, unknown 46.4
2587 Male, age 74, left hemisphere 43.8
Ventral tegmental area
nTPM: 46.2
2223 Female, age 72, unknown 58.7
1942 Male, age 51, unknown 52.5
2218 Male, age 76, both hemispheres 48.0
1915 Female, age 42, unknown 41.7
2021 Male, age 53, unknown 40.0
2410 Female, age 72, unknown 36.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.0
Samples: 139

Max nTPM: 73.3
Min nTPM: 9.2
Std nTPM: 8.2
Median nTPM: 18.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 73.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 56.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 52.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 41.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 37.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 37.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 29.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 29.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 27.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 27.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 27.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.5
FF:10158-103A5 76 years, female 13.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.4
Samples: 4

Max nTPM: 23.6
Min nTPM: 13.3
Sample A Female 21.0
Sample B Female 15.7
Sample C Male 23.6
Sample D Male 13.3
Midbrain
nTPM: 31.8
Samples: 4

Max nTPM: 61.8
Min nTPM: 17.7
Sample A Female 18.7
Sample B Female 17.7
Sample C Male 61.8
Sample D Male 28.9
Periaqueductal gray
nTPM: 19.3
Samples: 3

Max nTPM: 22.1
Min nTPM: 17.9
Sample B Female 17.9
Sample C Male 22.1
Sample D Male 18.0
Superior colliculi
nTPM: 30.2
Samples: 4

Max nTPM: 41.4
Min nTPM: 22.4
Sample A Female 22.4
Sample B Female 25.2
Sample C Male 41.4
Sample D Male 31.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.4
Samples: 4

Max nTPM: 25.2
Min nTPM: 21.3
Sample A Male 25.2
Sample B Male 21.3
Sample C Female 23.6
Sample D Female 23.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.3
71064051 Antisense, RP_050725_03_C09, Mouse strain C57BL/6J (56 days, male) 5.8
68745018 Antisense, RP_050210_01_B03, Mouse strain C57BL/6J (56 days, male) 4.7

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