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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
40.1
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 40.1
Samples: 152
Max nTPM: 183.2
Min nTPM: 1.5
Std nTPM: 33.6
Median nTPM: 31.8
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
183.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
165.2
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
161.9
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
152.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
143.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
132.0
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
102.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
101.0
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
100.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
98.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
96.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
91.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
87.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
82.0
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
79.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
77.3
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
75.8
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
75.8
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
75.7
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
73.8
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
73.6
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
73.4
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
69.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
66.2
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
65.2
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
64.8
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
62.2
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
60.8
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
60.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
59.4
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
57.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
57.5
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
57.2
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
55.7
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
54.1
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
53.8
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
53.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
53.7
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
53.5
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
53.1
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
52.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
51.4
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
51.3
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
51.3
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
51.2
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
51.1
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
49.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
47.8
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
46.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
44.9
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
43.8
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
43.7
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
43.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
42.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
42.0
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
42.0
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
41.8
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
41.7
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
40.6
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
40.5
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
40.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
39.8
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
39.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
37.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
37.4
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
36.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
36.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
33.4
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
33.2
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
33.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
32.6
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
32.6
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
32.5
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
32.2
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
32.1
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
32.1
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
31.4
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
30.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
30.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
30.5
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
30.4
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
30.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
29.4
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
29.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
29.0
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
28.3
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
27.3
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
26.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
24.3
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
24.1
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
23.5
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
23.2
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
22.8
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
22.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
22.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
21.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
20.7
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
20.6
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
20.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
20.5
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
20.0
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
20.0
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
19.8
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
19.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
19.2
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
18.2
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
17.9
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
17.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
17.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
17.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
16.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
16.5
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
16.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
16.4
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
16.4
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
16.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
15.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
15.5
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
15.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
15.1
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
14.9
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
14.7
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
14.3
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
12.7
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
12.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
11.9
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
11.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
11.7
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
11.1
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
11.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
11.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
10.8
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
10.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
10.5
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
9.7
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
9.5
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
9.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
9.4
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
9.0
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
8.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
8.7
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
8.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
7.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
6.9
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
6.7
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
6.5
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
5.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
5.6
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
4.4
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
3.2
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
1.6
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
1.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
251.1
Mouse sample
Sample description
nTPM
Amygdala nTPM: 251.1
Samples: 4
Max nTPM: 266.0
Min nTPM: 218.6
Sample A
Male
257.2
Sample B
Male
218.6
Sample C
Female
262.5
Sample D
Female
266.0
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
