MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:761.6 nTPM
HPA Brain:706.5 nTPM
GTEx:761.6 nTPM
FANTOM5:718.1 Scaled Tags Per Million
Mouse:0.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 706.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 590.7
2019 Male, age 18, unknown 773.7
2411 Female, age 72, unknown 675.5
1827 Male, age 72, unknown 647.1
2828 Female, age 72, unknown 617.3
2586 Male, age 75, left hemisphere 615.6
1870 Female, age 42, unknown 589.0
1833 Male, age 53, unknown 524.7
1830 Male, age 51, unknown 517.1
2666 Male, age 74, left hemisphere 479.8
2219 Male, age 76, both hemispheres 467.4
Dorsal raphe nucleus
nTPM: 605.9
2298 Female, age 72, unknown 738.8
2750 Male, age 76, both hemispheres 633.8
2047 Male, age 72, unknown 569.7
1828 Male, age 53, unknown 554.2
2016 Female, age 72, unknown 532.9
Inferior colliculus
nTPM: 573.6
2097 Female, age 72, unknown 684.7
1848 Female, age 42, unknown 565.0
1890 Male, age 53, unknown 558.8
2849 Male, age 72, unknown 486.0
Median raphe nucleus
nTPM: 628.6
2220 Male, age 76, midline 628.6
Periaquaductal grey, anterior
nTPM: 615.3
2502 Female, age 75, unknown 673.1
1795 Male, age 51, unknown 607.0
1947 Male, age 18, unknown 565.8
Periaquaductal grey, dorsal
nTPM: 520.5
2464 Female, age 72, unknown 572.5
1840 Male, age 53, unknown 518.2
1831 Male, age 72, unknown 505.2
2850 Male, age 76, both hemispheres 486.1
Periaquaductal grey, lateral
nTPM: 530.7
2272 Male, age 74, both hemispheres 570.3
2053 Male, age 18, unknown 544.2
2140 Male, age 76, both hemispheres 477.7
Pretectal area
nTPM: 706.5
1817 Female, age 42, unknown 889.6
2007 Male, age 72, unknown 883.9
1816 Male, age 51, unknown 853.4
1944 Female, age 72, unknown 816.1
1815 Male, age 53, unknown 779.0
2667 Female, age 75, unknown 719.4
2273 Male, age 74, both hemispheres 667.2
2224 Female, age 72, unknown 611.8
2316 Male, age 76, right hemisphere 537.2
2407 Male, age 75, both hemispheres 511.4
2825 Male, age 18, unknown 502.2
Red nucleus
nTPM: 611.2
2785 Male, age 18, unknown 750.3
1821 Female, age 72, unknown 725.7
2503 Female, age 72, unknown 686.1
1954 Female, age 42, unknown 602.9
2725 Female, age 75, unknown 593.8
2823 Male, age 76, right hemisphere 592.8
1865 Male, age 51, unknown 591.1
2227 Male, age 72, unknown 580.6
1904 Male, age 53, unknown 573.4
2769 Male, age 72, unknown 567.6
2588 Male, age 74, left hemisphere 536.0
2584 Male, age 75, left hemisphere 533.7
Substantia nigra
nTPM: 581.9
1889 Female, age 72, unknown 724.1
1916 Female, age 42, unknown 660.0
1941 Male, age 53, unknown 659.6
1851 Male, age 51, unknown 615.5
2241 Male, age 72, unknown 592.6
2583 Male, age 75, right hemisphere 556.7
2409 Female, age 72, unknown 537.2
2590 Female, age 75, unknown 516.6
2665 Male, age 74, both hemispheres 500.0
2699 Male, age 18, unknown 456.2
Superior colliculus
nTPM: 602.1
2087 Female, age 72, unknown 722.0
2261 Male, age 18, unknown 672.6
1796 Male, age 53, unknown 638.7
2668 Female, age 75, unknown 600.0
1995 Male, age 72, unknown 586.8
2587 Male, age 74, left hemisphere 585.9
1913 Female, age 42, unknown 584.8
1839 Male, age 51, unknown 549.5
2664 Male, age 75, both hemispheres 546.6
1895 Male, age 76, right hemisphere 534.5
Ventral tegmental area
nTPM: 581.6
2410 Female, age 72, unknown 625.3
2223 Female, age 72, unknown 606.1
1915 Female, age 42, unknown 598.3
1942 Male, age 51, unknown 564.5
2021 Male, age 53, unknown 553.1
2218 Male, age 76, both hemispheres 542.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 761.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 761.6
Samples: 139

Max nTPM: 1350.3
Min nTPM: 423.1
Std nTPM: 152.7
Median nTPM: 734.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1350.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1220.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1212.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1187.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1173.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1096.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1079.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1077.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1061.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1028.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1018.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 718.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 718.1
FF:10158-103A5 76 years, female 718.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71919523 Antisense, RP_051012_02_E12, Mouse strain C57BL/6J (56 days, male) 0.0

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