We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
13.3
nTPM
HPA Brain:
72.8
nTPM
GTEx:
13.3
nTPM
FANTOM5:
97.1
Scaled Tags Per Million
Pig:
57.9
nTPM
Mouse:
72.1
nTPM
Allen mouse:
4.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
72.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 64.1
2411
Female, age 72, unknown
71.8
2019
Male, age 18, unknown
71.5
2666
Male, age 74, left hemisphere
70.1
1827
Male, age 72, unknown
69.4
1870
Female, age 42, unknown
67.5
1833
Male, age 53, unknown
63.6
2828
Female, age 72, unknown
62.0
1830
Male, age 51, unknown
58.5
2219
Male, age 76, both hemispheres
54.1
2586
Male, age 75, left hemisphere
52.6
Dorsal raphe nucleus nTPM: 68.9
2298
Female, age 72, unknown
82.1
2750
Male, age 76, both hemispheres
68.5
1828
Male, age 53, unknown
66.7
2016
Female, age 72, unknown
64.6
2047
Male, age 72, unknown
62.8
Inferior colliculus nTPM: 61.1
2097
Female, age 72, unknown
66.5
1848
Female, age 42, unknown
60.5
1890
Male, age 53, unknown
60.3
2849
Male, age 72, unknown
56.8
Median raphe nucleus nTPM: 64.7
2220
Male, age 76, midline
64.7
Periaquaductal grey, anterior nTPM: 72.8
1947
Male, age 18, unknown
75.5
2502
Female, age 75, unknown
71.5
1795
Male, age 51, unknown
71.3
Periaquaductal grey, dorsal nTPM: 63.2
2850
Male, age 76, both hemispheres
73.1
2464
Female, age 72, unknown
61.7
1831
Male, age 72, unknown
59.4
1840
Male, age 53, unknown
58.6
Periaquaductal grey, lateral nTPM: 69.2
2272
Male, age 74, both hemispheres
77.2
2140
Male, age 76, both hemispheres
68.7
2053
Male, age 18, unknown
61.7
Pretectal area nTPM: 69.7
1817
Female, age 42, unknown
78.7
2273
Male, age 74, both hemispheres
77.7
2007
Male, age 72, unknown
76.2
1816
Male, age 51, unknown
73.7
2667
Female, age 75, unknown
73.7
2224
Female, age 72, unknown
71.3
1815
Male, age 53, unknown
70.3
1944
Female, age 72, unknown
65.8
2825
Male, age 18, unknown
61.8
2316
Male, age 76, right hemisphere
60.7
2407
Male, age 75, both hemispheres
57.1
Red nucleus nTPM: 63.6
1821
Female, age 72, unknown
73.8
2785
Male, age 18, unknown
67.6
1904
Male, age 53, unknown
66.1
2725
Female, age 75, unknown
65.8
1865
Male, age 51, unknown
65.5
2503
Female, age 72, unknown
65.1
2227
Male, age 72, unknown
62.6
2769
Male, age 72, unknown
62.3
1954
Female, age 42, unknown
62.0
2823
Male, age 76, right hemisphere
60.3
2588
Male, age 74, left hemisphere
60.0
2584
Male, age 75, left hemisphere
52.4
Substantia nigra nTPM: 64.8
1916
Female, age 42, unknown
75.1
2241
Male, age 72, unknown
71.3
1851
Male, age 51, unknown
70.5
1889
Female, age 72, unknown
69.1
1941
Male, age 53, unknown
65.4
2665
Male, age 74, both hemispheres
65.0
2590
Female, age 75, unknown
61.3
2409
Female, age 72, unknown
60.7
2699
Male, age 18, unknown
56.5
2583
Male, age 75, right hemisphere
52.8
Superior colliculus nTPM: 63.5
2261
Male, age 18, unknown
72.8
1796
Male, age 53, unknown
68.7
1913
Female, age 42, unknown
66.7
2587
Male, age 74, left hemisphere
66.5
2087
Female, age 72, unknown
66.2
2668
Female, age 75, unknown
61.3
1995
Male, age 72, unknown
61.2
1895
Male, age 76, right hemisphere
61.1
1839
Male, age 51, unknown
60.8
2664
Male, age 75, both hemispheres
49.9
Ventral tegmental area nTPM: 66.4
2410
Female, age 72, unknown
71.1
1915
Female, age 42, unknown
69.5
2218
Male, age 76, both hemispheres
65.7
2223
Female, age 72, unknown
64.5
1942
Male, age 51, unknown
63.9
2021
Male, age 53, unknown
63.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
13.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 13.3
Samples: 139
Max nTPM: 34.3
Min nTPM: 3.4
Std nTPM: 5.6
Median nTPM: 13.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
34.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
31.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
26.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
25.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
25.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
24.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
24.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
23.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
21.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
21.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
21.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
21.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
21.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
20.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
20.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
20.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
20.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
19.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
19.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
19.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
18.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
18.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
18.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
18.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
18.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
17.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
17.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
17.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
17.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
17.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
17.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
17.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
16.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
16.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
16.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
16.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
15.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
15.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
15.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
15.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
15.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
15.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
15.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
15.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
15.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
15.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
15.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
14.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
14.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
14.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
14.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
14.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
14.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
14.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
14.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
14.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
14.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
14.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
14.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
14.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
14.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
13.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
13.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
13.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
13.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
13.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
13.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
13.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
13.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
13.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
13.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
13.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
12.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
12.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
12.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
12.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
12.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
12.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
12.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
11.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
11.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
11.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
11.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
11.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
11.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
11.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
11.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
11.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
11.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
10.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
10.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
10.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
10.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
10.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
9.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
9.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
9.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
9.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
9.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
9.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
9.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
9.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
9.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
9.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
8.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
8.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
8.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
8.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
8.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
8.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
8.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
8.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
8.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
8.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
8.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
8.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
7.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
7.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
7.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
7.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
6.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
6.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
6.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
6.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
6.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
5.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
5.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
5.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
5.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
5.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
5.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
5.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
5.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
5.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
4.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
4.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
4.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
4.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
3.4
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
72.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 72.1
Samples: 4
Max nTPM: 75.7
Min nTPM: 67.8
Sample A
Male
67.8
Sample B
Male
72.4
Sample C
Female
75.7
Sample D
Female
72.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.