MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:180.5 nTPM
HPA Brain:161.0 nTPM
GTEx:180.5 nTPM
FANTOM5:109.9 Scaled Tags Per Million
Pig:256.1 nTPM
Mouse:276.9 nTPM
Allen mouse:19.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 161.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 139.3
1827 Male, age 72, unknown 159.0
2666 Male, age 74, left hemisphere 159.0
2019 Male, age 18, unknown 143.3
2828 Female, age 72, unknown 142.3
2411 Female, age 72, unknown 140.5
2586 Male, age 75, left hemisphere 137.2
2219 Male, age 76, both hemispheres 133.4
1870 Female, age 42, unknown 131.5
1833 Male, age 53, unknown 128.1
1830 Male, age 51, unknown 118.3
Dorsal raphe nucleus
nTPM: 135.2
2298 Female, age 72, unknown 158.8
2047 Male, age 72, unknown 144.5
1828 Male, age 53, unknown 135.1
2750 Male, age 76, both hemispheres 124.5
2016 Female, age 72, unknown 113.0
Inferior colliculus
nTPM: 138.5
2097 Female, age 72, unknown 151.9
2849 Male, age 72, unknown 144.5
1848 Female, age 42, unknown 132.9
1890 Male, age 53, unknown 124.7
Median raphe nucleus
nTPM: 141.8
2220 Male, age 76, midline 141.8
Periaquaductal grey, anterior
nTPM: 144.1
1795 Male, age 51, unknown 152.5
1947 Male, age 18, unknown 149.1
2502 Female, age 75, unknown 130.7
Periaquaductal grey, dorsal
nTPM: 129.0
2850 Male, age 76, both hemispheres 134.2
1840 Male, age 53, unknown 133.3
1831 Male, age 72, unknown 125.3
2464 Female, age 72, unknown 123.0
Periaquaductal grey, lateral
nTPM: 123.3
2272 Male, age 74, both hemispheres 129.3
2053 Male, age 18, unknown 122.5
2140 Male, age 76, both hemispheres 118.0
Pretectal area
nTPM: 161.0
1816 Male, age 51, unknown 198.9
1817 Female, age 42, unknown 195.4
1944 Female, age 72, unknown 182.2
2007 Male, age 72, unknown 181.0
2667 Female, age 75, unknown 174.5
1815 Male, age 53, unknown 171.1
2224 Female, age 72, unknown 142.6
2407 Male, age 75, both hemispheres 136.3
2273 Male, age 74, both hemispheres 135.1
2825 Male, age 18, unknown 131.9
2316 Male, age 76, right hemisphere 121.6
Red nucleus
nTPM: 127.6
2725 Female, age 75, unknown 151.3
2785 Male, age 18, unknown 145.1
1821 Female, age 72, unknown 138.9
2584 Male, age 75, left hemisphere 129.7
2503 Female, age 72, unknown 127.4
1954 Female, age 42, unknown 125.8
2823 Male, age 76, right hemisphere 121.7
2588 Male, age 74, left hemisphere 121.4
1865 Male, age 51, unknown 121.0
1904 Male, age 53, unknown 117.7
2227 Male, age 72, unknown 116.1
2769 Male, age 72, unknown 115.2
Substantia nigra
nTPM: 140.1
1889 Female, age 72, unknown 166.5
1916 Female, age 42, unknown 166.5
1941 Male, age 53, unknown 157.7
1851 Male, age 51, unknown 143.6
2583 Male, age 75, right hemisphere 137.2
2241 Male, age 72, unknown 133.9
2409 Female, age 72, unknown 130.1
2665 Male, age 74, both hemispheres 129.2
2699 Male, age 18, unknown 123.2
2590 Female, age 75, unknown 112.9
Superior colliculus
nTPM: 140.9
1796 Male, age 53, unknown 159.7
2261 Male, age 18, unknown 156.7
2087 Female, age 72, unknown 152.8
2668 Female, age 75, unknown 145.3
2587 Male, age 74, left hemisphere 138.7
1839 Male, age 51, unknown 135.0
1913 Female, age 42, unknown 134.9
2664 Male, age 75, both hemispheres 133.8
1895 Male, age 76, right hemisphere 129.0
1995 Male, age 72, unknown 123.2
Ventral tegmental area
nTPM: 135.5
2410 Female, age 72, unknown 150.2
1915 Female, age 42, unknown 144.6
2218 Male, age 76, both hemispheres 137.9
2223 Female, age 72, unknown 133.0
1942 Male, age 51, unknown 126.1
2021 Male, age 53, unknown 120.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 180.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 180.5
Samples: 139

Max nTPM: 299.2
Min nTPM: 115.0
Std nTPM: 28.6
Median nTPM: 181.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 299.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 253.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 252.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 242.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 239.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 234.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 228.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 227.7
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 223.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 223.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 221.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 109.9
FF:10158-103A5 76 years, female 109.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 256.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 222.7
Samples: 4

Max nTPM: 267.3
Min nTPM: 170.0
Sample A Female 267.3
Sample B Female 170.0
Sample C Male 253.1
Sample D Male 200.5
Midbrain
nTPM: 256.1
Samples: 4

Max nTPM: 299.4
Min nTPM: 204.0
Sample A Female 281.8
Sample B Female 204.0
Sample C Male 299.4
Sample D Male 239.1
Periaqueductal gray
nTPM: 186.4
Samples: 3

Max nTPM: 215.3
Min nTPM: 170.8
Sample B Female 173.0
Sample C Male 215.3
Sample D Male 170.8
Superior colliculi
nTPM: 254.0
Samples: 4

Max nTPM: 291.2
Min nTPM: 192.0
Sample A Female 291.2
Sample B Female 192.0
Sample C Male 282.8
Sample D Male 250.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 276.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 277.0
Samples: 4

Max nTPM: 303.0
Min nTPM: 257.7
Sample A Male 303.0
Sample B Male 257.7
Sample C Female 259.4
Sample D Female 287.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 19.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.0
513491 Antisense, RP_040810_01_H11, Mouse strain C57BL/6J (56 days, male) 19.0

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