MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.0 nTPM
HPA Brain:58.8 nTPM
GTEx:36.0 nTPM
FANTOM5:62.1 Scaled Tags Per Million
Pig:19.3 nTPM
Mouse:13.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.2
2666 Male, age 74, left hemisphere 65.1
2019 Male, age 18, unknown 62.1
2586 Male, age 75, left hemisphere 62.1
1830 Male, age 51, unknown 59.2
1833 Male, age 53, unknown 54.9
2828 Female, age 72, unknown 54.8
2411 Female, age 72, unknown 53.3
1827 Male, age 72, unknown 50.4
1870 Female, age 42, unknown 45.1
2219 Male, age 76, both hemispheres 44.8
Dorsal raphe nucleus
nTPM: 53.7
2016 Female, age 72, unknown 62.3
2298 Female, age 72, unknown 55.8
2750 Male, age 76, both hemispheres 51.3
1828 Male, age 53, unknown 51.0
2047 Male, age 72, unknown 48.1
Inferior colliculus
nTPM: 44.8
1890 Male, age 53, unknown 49.1
2097 Female, age 72, unknown 47.5
2849 Male, age 72, unknown 41.4
1848 Female, age 42, unknown 41.3
Median raphe nucleus
nTPM: 55.7
2220 Male, age 76, midline 55.7
Periaquaductal grey, anterior
nTPM: 49.0
2502 Female, age 75, unknown 52.4
1795 Male, age 51, unknown 49.4
1947 Male, age 18, unknown 45.3
Periaquaductal grey, dorsal
nTPM: 49.4
1831 Male, age 72, unknown 58.3
1840 Male, age 53, unknown 49.4
2464 Female, age 72, unknown 49.4
2850 Male, age 76, both hemispheres 40.7
Periaquaductal grey, lateral
nTPM: 52.7
2272 Male, age 74, both hemispheres 63.3
2053 Male, age 18, unknown 52.6
2140 Male, age 76, both hemispheres 42.1
Pretectal area
nTPM: 51.4
2273 Male, age 74, both hemispheres 59.2
2224 Female, age 72, unknown 57.0
2007 Male, age 72, unknown 56.4
1817 Female, age 42, unknown 55.3
2407 Male, age 75, both hemispheres 51.7
2316 Male, age 76, right hemisphere 50.6
1815 Male, age 53, unknown 50.4
1816 Male, age 51, unknown 49.1
2825 Male, age 18, unknown 48.1
2667 Female, age 75, unknown 44.3
1944 Female, age 72, unknown 42.7
Red nucleus
nTPM: 56.1
2503 Female, age 72, unknown 71.7
2584 Male, age 75, left hemisphere 64.5
2227 Male, age 72, unknown 59.8
2769 Male, age 72, unknown 59.3
1954 Female, age 42, unknown 58.0
2785 Male, age 18, unknown 56.4
1904 Male, age 53, unknown 55.8
1865 Male, age 51, unknown 54.0
1821 Female, age 72, unknown 52.9
2588 Male, age 74, left hemisphere 48.2
2823 Male, age 76, right hemisphere 47.4
2725 Female, age 75, unknown 45.2
Substantia nigra
nTPM: 58.8
2665 Male, age 74, both hemispheres 77.6
2583 Male, age 75, right hemisphere 70.6
2590 Female, age 75, unknown 64.8
1916 Female, age 42, unknown 60.0
2699 Male, age 18, unknown 59.7
1851 Male, age 51, unknown 59.4
2409 Female, age 72, unknown 58.1
1941 Male, age 53, unknown 50.4
2241 Male, age 72, unknown 43.7
1889 Female, age 72, unknown 43.6
Superior colliculus
nTPM: 54.1
2664 Male, age 75, both hemispheres 65.0
2668 Female, age 75, unknown 63.5
1995 Male, age 72, unknown 61.6
1913 Female, age 42, unknown 60.3
2261 Male, age 18, unknown 51.1
2587 Male, age 74, left hemisphere 51.0
1839 Male, age 51, unknown 50.8
2087 Female, age 72, unknown 50.5
1796 Male, age 53, unknown 50.1
1895 Male, age 76, right hemisphere 36.9
Ventral tegmental area
nTPM: 56.9
2021 Male, age 53, unknown 66.4
2223 Female, age 72, unknown 59.1
1942 Male, age 51, unknown 57.1
2410 Female, age 72, unknown 53.8
1915 Female, age 42, unknown 53.0
2218 Male, age 76, both hemispheres 51.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.0
Samples: 139

Max nTPM: 71.2
Min nTPM: 21.7
Std nTPM: 9.4
Median nTPM: 34.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 71.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 68.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 64.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 61.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 60.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 60.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 60.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 57.6
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 55.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 55.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 52.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.1
FF:10158-103A5 76 years, female 62.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.7
Samples: 4

Max nTPM: 18.1
Min nTPM: 13.7
Sample A Female 16.8
Sample B Female 18.0
Sample C Male 18.1
Sample D Male 13.7
Midbrain
nTPM: 16.6
Samples: 4

Max nTPM: 19.3
Min nTPM: 15.3
Sample A Female 15.5
Sample B Female 15.3
Sample C Male 19.3
Sample D Male 16.1
Periaqueductal gray
nTPM: 15.2
Samples: 3

Max nTPM: 16.5
Min nTPM: 14.3
Sample B Female 14.3
Sample C Male 16.5
Sample D Male 14.7
Superior colliculi
nTPM: 19.2
Samples: 4

Max nTPM: 22.8
Min nTPM: 16.2
Sample A Female 18.5
Sample B Female 22.8
Sample C Male 19.4
Sample D Male 16.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.9
Samples: 4

Max nTPM: 15.0
Min nTPM: 12.7
Sample A Male 12.7
Sample B Male 13.8
Sample C Female 15.0
Sample D Female 14.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68300896 Antisense, RP_041129_02_D03, Mouse strain C57BL/6J (56 days, male) 0.0

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