HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		73.064
RNA expressioni
Consensus:45.5 nTPM
HPA Brain:53.7 nTPM
GTEx:45.5 nTPM
FANTOM5:136.7 Scaled Tags Per Million
Pig:129.0 nTPM
Mouse:103.4 nTPM
Allen mouse:8.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA002828Antibody HPA002829Antibody CAB016446
Glial cells MediumNot detectedHigh
Neuronal cells MediumMediumHigh







HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA002828
Hippocampal formation mean intensity 73.064
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 58.428
Molecular layer of the dentate gyrus 53.246
Granular dentate gyrus 71.973
CA1 - oriens layer 37.497
CA1 - pyramidal layer 64.760
CA1 - radiatum layer 47.806
CA2 - oriens layer 29.355
CA2 - pyramidal layer 54.141
CA2 - radiatum layer 36.659
CA3 - oriens layer 33.879
CA3 - pyramidal layer 61.448
CA3 - radiatum layer 36.170
Stratum lucidum 45.273
Lacunosum moleculare 56.188
Subiculum 48.369

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 53.7
Sample id Sample description nTPM
Hippocampus
nTPM: 45.5
1898 Male, age 80, left hemisphere 62.7
1855 Male, age 76, left hemisphere 47.9
1911 Female, age 85, right hemisphere 44.3
2621 Female, age 67, right hemisphere 42.1
2148 Female, age 91, left hemisphere 38.9
2529 Female, age 94, left hemisphere 37.1
Dentate gyrus
nTPM: 45.2
1927 Female, age 91, both hemispheres 59.1
2010 Male, age 76, both hemispheres 58.1
2246 Female, age 85, both hemispheres 45.2
2530 Female, age 94, left hemisphere 41.2
2528 Male, age 74, both hemispheres 35.6
2531 Female, age 67, both hemispheres 32.0
Entorhinal gyrus
nTPM: 39.5
1938 Female, age 85, left hemisphere 47.6
1787 Male, age 76, left hemisphere 41.2
2764 Male, age 80, right hemisphere 40.6
2117 Female, age 91, right hemisphere 38.4
2686 Male, age 75, right hemisphere 35.0
2613 Female, age 94, left hemisphere 34.2
Hippocampus, CA1
nTPM: 51.6
2749 Male, age 80, left hemisphere 71.9
1873 Female, age 85, both hemispheres 56.3
2045 Male, age 76, both hemispheres 53.9
2527 Male, age 74, both hemispheres 40.3
2082 Female, age 91, right hemisphere 35.5
Hippocampus, CA2
nTPM: 50.7
1892 Male, age 76, both hemispheres 67.0
1963 Male, age 80, left hemisphere 57.0
2437 Female, age 94, left hemisphere 50.1
1940 Female, age 85, left hemisphere 48.6
2249 Male, age 74, both hemispheres 40.9
2113 Female, age 91, right hemisphere 40.4
Hippocampus, CA3
nTPM: 45.5
2137 Male, age 80, left hemisphere 60.9
1867 Male, age 76, both hemispheres 59.9
1891 Female, age 85, both hemispheres 45.6
2436 Male, age 74, both hemispheres 44.7
2620 Female, age 94, left hemisphere 35.6
2861 Female, age 67, both hemispheres 26.3
Parahippocampal cortex
nTPM: 44.4
1850 Male, age 80, both hemispheres 60.7
1990 Female, age 91, right hemisphere 48.3
1933 Female, age 85, both hemispheres 47.4
2018 Male, age 76, both hemispheres 46.8
2250 Female, age 67, right hemisphere 44.8
2693 Female, age 94, both hemispheres 44.4
2245 Female, age 91, both hemispheres 41.3
2532 Female, age 72, left hemisphere 38.1
2692 Male, age 74, both hemispheres 36.6
2622 Female, age 67, right hemisphere 35.2
Perirhinal gyrus
nTPM: 53.7
1847 Female, age 91, left hemisphere 61.1
1794 Male, age 80, right hemisphere 57.5
1841 Female, age 85, right hemisphere 55.8
2521 Female, age 94, right hemisphere 50.4
2848 Male, age 76, right hemisphere 43.5
Subiculum
nTPM: 45.1
1901 Male, age 80, both hemispheres 53.9
2438 Female, age 94, left hemisphere 53.3
2042 Male, age 76, both hemispheres 49.1
1977 Female, age 85, both hemispheres 45.0
2729 Female, age 91, right hemisphere 36.1
2619 Male, age 74, both hemispheres 33.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 45.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 45.5
Samples: 197

Max nTPM: 95.8
Min nTPM: 25.5
Std nTPM: 12.8
Median nTPM: 42.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 95.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 93.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 87.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 78.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 74.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 72.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 72.6
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 72.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 67.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 67.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 67.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 136.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 136.7
FF:10169-103B7 60 years, female 167.2
FF:10153-102I9 76 years, female 106.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 129.0
Pig sample Sample description nTPM
Subiculum
nTPM: 116.1
Samples: 4

Max nTPM: 144.3
Min nTPM: 103.9
Sample A Female 144.3
Sample B Female 106.8
Sample C Male 103.9
Sample D Male 109.3
Dorsal hippocampus
nTPM: 129.1
Samples: 4

Max nTPM: 160.2
Min nTPM: 108.2
Sample A Female 160.2
Sample B Female 126.5
Sample C Male 121.3
Sample D Male 108.2
Entorhinal cortex
nTPM: 112.6
Samples: 4

Max nTPM: 124.7
Min nTPM: 95.6
Sample A Female 124.7
Sample B Female 122.3
Sample C Male 107.6
Sample D Male 95.6
Ventral hippocampus
nTPM: 114.5
Samples: 4

Max nTPM: 132.9
Min nTPM: 93.4
Sample A Female 118.5
Sample B Female 93.4
Sample C Male 113.3
Sample D Male 132.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 103.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 98.1
Samples: 4

Max nTPM: 101.8
Min nTPM: 91.2
Sample A Male 91.2
Sample B Male 101.1
Sample C Female 101.8
Sample D Female 98.1
Hippocampal formation
nTPM: 103.4
Samples: 4

Max nTPM: 122.8
Min nTPM: 94.2
Sample A Male 122.8
Sample B Male 101.7
Sample C Female 95.0
Sample D Female 94.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.6
69117056 Antisense, RP_050321_01_F09, Mouse strain C57BL/6J (56 days, male) 8.6

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