MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.6 nTPM
HPA Brain:45.6 nTPM
GTEx:17.6 nTPM
FANTOM5:28.0 Scaled Tags Per Million
Pig:84.9 nTPM
Mouse:141.9 nTPM
Allen mouse:15.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.0
1827 Male, age 72, unknown 40.9
2411 Female, age 72, unknown 40.4
1870 Female, age 42, unknown 34.2
1833 Male, age 53, unknown 33.6
2219 Male, age 76, both hemispheres 29.9
1830 Male, age 51, unknown 29.3
2666 Male, age 74, left hemisphere 29.0
2828 Female, age 72, unknown 26.0
2586 Male, age 75, left hemisphere 25.3
2019 Male, age 18, unknown 21.8
Dorsal raphe nucleus
nTPM: 36.3
2298 Female, age 72, unknown 52.0
2047 Male, age 72, unknown 34.9
2750 Male, age 76, both hemispheres 33.3
1828 Male, age 53, unknown 30.8
2016 Female, age 72, unknown 30.5
Inferior colliculus
nTPM: 37.2
2097 Female, age 72, unknown 47.9
2849 Male, age 72, unknown 38.1
1848 Female, age 42, unknown 37.2
1890 Male, age 53, unknown 25.7
Median raphe nucleus
nTPM: 45.6
2220 Male, age 76, midline 45.6
Periaquaductal grey, anterior
nTPM: 40.5
2502 Female, age 75, unknown 45.5
1947 Male, age 18, unknown 41.3
1795 Male, age 51, unknown 34.8
Periaquaductal grey, dorsal
nTPM: 39.8
1840 Male, age 53, unknown 44.1
1831 Male, age 72, unknown 40.7
2850 Male, age 76, both hemispheres 38.8
2464 Female, age 72, unknown 35.5
Periaquaductal grey, lateral
nTPM: 37.5
2053 Male, age 18, unknown 42.0
2272 Male, age 74, both hemispheres 35.7
2140 Male, age 76, both hemispheres 34.8
Pretectal area
nTPM: 39.0
2224 Female, age 72, unknown 55.1
1816 Male, age 51, unknown 44.6
2825 Male, age 18, unknown 42.5
2273 Male, age 74, both hemispheres 39.5
1817 Female, age 42, unknown 38.3
1815 Male, age 53, unknown 38.1
1944 Female, age 72, unknown 37.0
2316 Male, age 76, right hemisphere 36.4
2407 Male, age 75, both hemispheres 34.6
2007 Male, age 72, unknown 34.4
2667 Female, age 75, unknown 28.0
Red nucleus
nTPM: 25.3
2725 Female, age 75, unknown 35.0
1904 Male, age 53, unknown 27.9
1821 Female, age 72, unknown 27.1
2503 Female, age 72, unknown 26.4
1954 Female, age 42, unknown 26.1
2584 Male, age 75, left hemisphere 25.0
2785 Male, age 18, unknown 24.2
2823 Male, age 76, right hemisphere 23.9
2769 Male, age 72, unknown 22.2
1865 Male, age 51, unknown 22.1
2588 Male, age 74, left hemisphere 21.7
2227 Male, age 72, unknown 21.6
Substantia nigra
nTPM: 26.5
2241 Male, age 72, unknown 36.1
1889 Female, age 72, unknown 35.9
2590 Female, age 75, unknown 28.5
1941 Male, age 53, unknown 25.0
2409 Female, age 72, unknown 24.6
1851 Male, age 51, unknown 23.5
2583 Male, age 75, right hemisphere 23.4
2665 Male, age 74, both hemispheres 23.4
1916 Female, age 42, unknown 22.8
2699 Male, age 18, unknown 22.1
Superior colliculus
nTPM: 32.5
2261 Male, age 18, unknown 42.4
1895 Male, age 76, right hemisphere 40.5
1796 Male, age 53, unknown 38.6
1839 Male, age 51, unknown 36.5
2087 Female, age 72, unknown 32.9
2587 Male, age 74, left hemisphere 31.8
2664 Male, age 75, both hemispheres 27.2
1913 Female, age 42, unknown 25.9
2668 Female, age 75, unknown 25.4
1995 Male, age 72, unknown 23.8
Ventral tegmental area
nTPM: 34.6
1942 Male, age 51, unknown 39.5
2218 Male, age 76, both hemispheres 37.0
2021 Male, age 53, unknown 35.9
1915 Female, age 42, unknown 32.6
2410 Female, age 72, unknown 32.1
2223 Female, age 72, unknown 30.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.6
Samples: 139

Max nTPM: 55.5
Min nTPM: 2.7
Std nTPM: 11.2
Median nTPM: 14.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 55.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 51.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 50.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 47.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 46.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 45.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 40.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 40.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 39.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 39.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 38.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.0
FF:10158-103A5 76 years, female 28.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 84.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 84.9
Samples: 4

Max nTPM: 96.0
Min nTPM: 74.7
Sample A Female 90.0
Sample B Female 78.8
Sample C Male 96.0
Sample D Male 74.7
Midbrain
nTPM: 69.8
Samples: 4

Max nTPM: 90.0
Min nTPM: 45.4
Sample A Female 45.4
Sample B Female 90.0
Sample C Male 57.7
Sample D Male 85.9
Periaqueductal gray
nTPM: 81.2
Samples: 3

Max nTPM: 82.8
Min nTPM: 78.9
Sample B Female 78.9
Sample C Male 82.8
Sample D Male 81.9
Superior colliculi
nTPM: 61.8
Samples: 4

Max nTPM: 73.1
Min nTPM: 50.1
Sample A Female 67.7
Sample B Female 50.1
Sample C Male 56.2
Sample D Male 73.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 141.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 141.9
Samples: 4

Max nTPM: 146.6
Min nTPM: 137.3
Sample A Male 137.3
Sample B Male 146.6
Sample C Female 143.0
Sample D Female 140.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.7
71358579 Antisense, RP_050725_03_E08, Mouse strain C57BL/6J (56 days, male) 16.8
68798962 Antisense, RP_050217_01_F09, Mouse strain C57BL/6J (56 days, male) 14.5

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