MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:175.1 nTPM
HPA Brain:186.2 nTPM
GTEx:175.1 nTPM
FANTOM5:393.9 Scaled Tags Per Million
Pig:10.1 nTPM
Mouse:3.3 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 186.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 110.9
2019 Male, age 18, unknown 172.4
1830 Male, age 51, unknown 142.7
1833 Male, age 53, unknown 139.6
2411 Female, age 72, unknown 138.3
1870 Female, age 42, unknown 135.0
2828 Female, age 72, unknown 93.7
2666 Male, age 74, left hemisphere 89.9
2219 Male, age 76, both hemispheres 71.0
1827 Male, age 72, unknown 67.7
2586 Male, age 75, left hemisphere 58.5
Dorsal raphe nucleus
nTPM: 81.7
2750 Male, age 76, both hemispheres 173.1
1828 Male, age 53, unknown 78.9
2016 Female, age 72, unknown 77.4
2047 Male, age 72, unknown 47.7
2298 Female, age 72, unknown 31.6
Inferior colliculus
nTPM: 69.5
2849 Male, age 72, unknown 76.6
1848 Female, age 42, unknown 75.0
1890 Male, age 53, unknown 69.1
2097 Female, age 72, unknown 57.2
Median raphe nucleus
nTPM: 82.2
2220 Male, age 76, midline 82.2
Periaquaductal grey, anterior
nTPM: 47.5
1947 Male, age 18, unknown 51.6
2502 Female, age 75, unknown 51.5
1795 Male, age 51, unknown 39.5
Periaquaductal grey, dorsal
nTPM: 42.4
2464 Female, age 72, unknown 74.4
1831 Male, age 72, unknown 49.9
1840 Male, age 53, unknown 23.7
2850 Male, age 76, both hemispheres 21.6
Periaquaductal grey, lateral
nTPM: 49.4
2272 Male, age 74, both hemispheres 66.8
2053 Male, age 18, unknown 56.9
2140 Male, age 76, both hemispheres 24.7
Pretectal area
nTPM: 68.9
1815 Male, age 53, unknown 108.7
2316 Male, age 76, right hemisphere 105.2
1817 Female, age 42, unknown 94.1
2007 Male, age 72, unknown 83.7
2407 Male, age 75, both hemispheres 71.0
2273 Male, age 74, both hemispheres 65.2
2825 Male, age 18, unknown 57.1
1944 Female, age 72, unknown 45.9
2224 Female, age 72, unknown 45.5
1816 Male, age 51, unknown 43.7
2667 Female, age 75, unknown 37.7
Red nucleus
nTPM: 186.2
2823 Male, age 76, right hemisphere 295.5
1821 Female, age 72, unknown 258.5
1865 Male, age 51, unknown 216.5
1904 Male, age 53, unknown 213.2
2785 Male, age 18, unknown 179.3
2503 Female, age 72, unknown 176.8
2769 Male, age 72, unknown 176.7
1954 Female, age 42, unknown 170.6
2227 Male, age 72, unknown 169.4
2725 Female, age 75, unknown 152.4
2588 Male, age 74, left hemisphere 133.5
2584 Male, age 75, left hemisphere 91.9
Substantia nigra
nTPM: 80.8
1889 Female, age 72, unknown 114.4
2590 Female, age 75, unknown 110.5
2409 Female, age 72, unknown 104.5
1851 Male, age 51, unknown 96.8
2583 Male, age 75, right hemisphere 77.7
2699 Male, age 18, unknown 71.0
2241 Male, age 72, unknown 68.1
1916 Female, age 42, unknown 61.9
1941 Male, age 53, unknown 61.0
2665 Male, age 74, both hemispheres 42.5
Superior colliculus
nTPM: 86.7
1895 Male, age 76, right hemisphere 122.2
2587 Male, age 74, left hemisphere 120.9
1913 Female, age 42, unknown 118.8
1995 Male, age 72, unknown 113.9
2668 Female, age 75, unknown 103.3
1839 Male, age 51, unknown 89.0
1796 Male, age 53, unknown 62.5
2087 Female, age 72, unknown 47.4
2664 Male, age 75, both hemispheres 45.6
2261 Male, age 18, unknown 43.6
Ventral tegmental area
nTPM: 92.4
2223 Female, age 72, unknown 137.0
2410 Female, age 72, unknown 135.8
2218 Male, age 76, both hemispheres 77.3
2021 Male, age 53, unknown 72.7
1942 Male, age 51, unknown 66.9
1915 Female, age 42, unknown 64.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 175.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 175.1
Samples: 139

Max nTPM: 548.1
Min nTPM: 44.2
Std nTPM: 95.1
Median nTPM: 154.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 548.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 483.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 451.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 435.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 431.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 395.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 390.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 385.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 330.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 329.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 327.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 393.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 393.9
FF:10158-103A5 76 years, female 393.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.0
Samples: 4

Max nTPM: 11.3
Min nTPM: 6.8
Sample A Female 6.8
Sample B Female 11.3
Sample C Male 8.5
Sample D Male 9.4
Midbrain
nTPM: 7.2
Samples: 4

Max nTPM: 9.7
Min nTPM: 5.4
Sample A Female 7.6
Sample B Female 9.7
Sample C Male 5.4
Sample D Male 5.9
Periaqueductal gray
nTPM: 10.1
Samples: 3

Max nTPM: 11.6
Min nTPM: 8.3
Sample B Female 10.5
Sample C Male 11.6
Sample D Male 8.3
Superior colliculi
nTPM: 5.6
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 6.0
Sample C Male 4.9
Sample D Male 6.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.3
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.0
Sample A Male 4.1
Sample B Male 3.4
Sample C Female 2.0
Sample D Female 3.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
69540351 Antisense, RP_050426_01_E11, Mouse strain C57BL/6J (56 days, male) 1.4

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