MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.9 nTPM
HPA Brain:21.9 nTPM
GTEx:7.9 nTPM
FANTOM5:13.7 Scaled Tags Per Million
Pig:12.8 nTPM
Mouse:6.7 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.4
2828 Female, age 72, unknown 21.5
1870 Female, age 42, unknown 20.1
2586 Male, age 75, left hemisphere 20.1
1830 Male, age 51, unknown 19.9
1833 Male, age 53, unknown 19.7
2019 Male, age 18, unknown 19.4
2666 Male, age 74, left hemisphere 18.8
2219 Male, age 76, both hemispheres 18.4
2411 Female, age 72, unknown 18.4
1827 Male, age 72, unknown 17.9
Dorsal raphe nucleus
nTPM: 17.2
2750 Male, age 76, both hemispheres 19.4
2016 Female, age 72, unknown 18.4
1828 Male, age 53, unknown 16.7
2047 Male, age 72, unknown 16.6
2298 Female, age 72, unknown 15.2
Inferior colliculus
nTPM: 17.7
2849 Male, age 72, unknown 18.9
1848 Female, age 42, unknown 18.4
1890 Male, age 53, unknown 18.0
2097 Female, age 72, unknown 15.7
Median raphe nucleus
nTPM: 17.4
2220 Male, age 76, midline 17.4
Periaquaductal grey, anterior
nTPM: 18.0
2502 Female, age 75, unknown 18.7
1795 Male, age 51, unknown 17.9
1947 Male, age 18, unknown 17.3
Periaquaductal grey, dorsal
nTPM: 18.7
2850 Male, age 76, both hemispheres 19.9
2464 Female, age 72, unknown 18.7
1831 Male, age 72, unknown 18.6
1840 Male, age 53, unknown 17.5
Periaquaductal grey, lateral
nTPM: 21.9
2140 Male, age 76, both hemispheres 23.7
2053 Male, age 18, unknown 21.0
2272 Male, age 74, both hemispheres 21.0
Pretectal area
nTPM: 19.9
2316 Male, age 76, right hemisphere 22.6
2667 Female, age 75, unknown 22.6
1815 Male, age 53, unknown 20.7
2273 Male, age 74, both hemispheres 20.5
2407 Male, age 75, both hemispheres 20.0
1817 Female, age 42, unknown 19.9
2007 Male, age 72, unknown 19.9
2825 Male, age 18, unknown 19.3
1944 Female, age 72, unknown 18.8
1816 Male, age 51, unknown 17.6
2224 Female, age 72, unknown 17.1
Red nucleus
nTPM: 21.7
2823 Male, age 76, right hemisphere 25.0
1865 Male, age 51, unknown 23.5
1904 Male, age 53, unknown 23.0
2769 Male, age 72, unknown 22.7
1954 Female, age 42, unknown 22.2
2227 Male, age 72, unknown 21.9
2588 Male, age 74, left hemisphere 21.4
2503 Female, age 72, unknown 21.3
2785 Male, age 18, unknown 21.1
1821 Female, age 72, unknown 20.6
2725 Female, age 75, unknown 19.3
2584 Male, age 75, left hemisphere 18.2
Substantia nigra
nTPM: 17.7
2699 Male, age 18, unknown 19.3
1851 Male, age 51, unknown 18.9
2590 Female, age 75, unknown 18.5
2583 Male, age 75, right hemisphere 18.3
1889 Female, age 72, unknown 18.1
1916 Female, age 42, unknown 17.6
2241 Male, age 72, unknown 17.3
2665 Male, age 74, both hemispheres 17.3
2409 Female, age 72, unknown 16.7
1941 Male, age 53, unknown 15.4
Superior colliculus
nTPM: 19.5
1913 Female, age 42, unknown 21.2
2087 Female, age 72, unknown 20.4
2261 Male, age 18, unknown 20.4
2664 Male, age 75, both hemispheres 20.0
1796 Male, age 53, unknown 19.8
1995 Male, age 72, unknown 19.8
1895 Male, age 76, right hemisphere 19.2
2587 Male, age 74, left hemisphere 18.4
1839 Male, age 51, unknown 18.2
2668 Female, age 75, unknown 17.5
Ventral tegmental area
nTPM: 18.3
2021 Male, age 53, unknown 19.7
2410 Female, age 72, unknown 19.3
1942 Male, age 51, unknown 18.5
2218 Male, age 76, both hemispheres 17.7
2223 Female, age 72, unknown 17.5
1915 Female, age 42, unknown 16.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.9
Samples: 139

Max nTPM: 19.8
Min nTPM: 3.8
Std nTPM: 2.1
Median nTPM: 7.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 19.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 15.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 13.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 13.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 12.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 11.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 11.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 11.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 11.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 11.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 10.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.7
FF:10158-103A5 76 years, female 13.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.3
Samples: 4

Max nTPM: 14.6
Min nTPM: 10.6
Sample A Female 11.6
Sample B Female 10.6
Sample C Male 12.2
Sample D Male 14.6
Midbrain
nTPM: 12.9
Samples: 4

Max nTPM: 17.5
Min nTPM: 10.7
Sample A Female 17.5
Sample B Female 10.7
Sample C Male 11.9
Sample D Male 11.3
Periaqueductal gray
nTPM: 9.5
Samples: 3

Max nTPM: 9.7
Min nTPM: 9.2
Sample B Female 9.7
Sample C Male 9.5
Sample D Male 9.2
Superior colliculi
nTPM: 12.0
Samples: 4

Max nTPM: 12.5
Min nTPM: 11.6
Sample A Female 12.5
Sample B Female 12.1
Sample C Male 11.6
Sample D Male 11.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.7
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.9
Sample A Male 6.3
Sample B Male 5.9
Sample C Female 7.2
Sample D Female 7.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
69782485 Antisense, RP_050505_03_B02, Mouse strain C57BL/6J (56 days, male) 1.0

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