MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:487.1 nTPM
HPA Brain:833.7 nTPM
GTEx:487.1 nTPM
FANTOM5:517.9 Scaled Tags Per Million
Pig:395.9 nTPM
Mouse:0.0 nTPM
Allen mouse:15.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 833.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 833.7
1870 Female, age 42, unknown 1054.5
2411 Female, age 72, unknown 1047.2
1830 Male, age 51, unknown 1032.2
1833 Male, age 53, unknown 992.8
2828 Female, age 72, unknown 891.4
2586 Male, age 75, left hemisphere 801.0
2019 Male, age 18, unknown 724.7
1827 Male, age 72, unknown 659.6
2666 Male, age 74, left hemisphere 626.9
2219 Male, age 76, both hemispheres 506.4
Dorsal raphe nucleus
nTPM: 731.2
2750 Male, age 76, both hemispheres 1170.6
2016 Female, age 72, unknown 706.9
2047 Male, age 72, unknown 614.0
1828 Male, age 53, unknown 601.2
2298 Female, age 72, unknown 563.2
Inferior colliculus
nTPM: 528.2
1848 Female, age 42, unknown 579.1
2849 Male, age 72, unknown 568.0
1890 Male, age 53, unknown 525.7
2097 Female, age 72, unknown 440.0
Median raphe nucleus
nTPM: 750.0
2220 Male, age 76, midline 750.0
Periaquaductal grey, anterior
nTPM: 711.8
2502 Female, age 75, unknown 946.4
1947 Male, age 18, unknown 613.9
1795 Male, age 51, unknown 575.2
Periaquaductal grey, dorsal
nTPM: 543.3
2464 Female, age 72, unknown 688.0
1831 Male, age 72, unknown 560.2
2850 Male, age 76, both hemispheres 503.4
1840 Male, age 53, unknown 421.5
Periaquaductal grey, lateral
nTPM: 612.9
2053 Male, age 18, unknown 853.0
2272 Male, age 74, both hemispheres 513.7
2140 Male, age 76, both hemispheres 472.1
Pretectal area
nTPM: 617.5
2407 Male, age 75, both hemispheres 852.1
2667 Female, age 75, unknown 771.7
2825 Male, age 18, unknown 771.4
2316 Male, age 76, right hemisphere 768.1
1815 Male, age 53, unknown 690.6
2224 Female, age 72, unknown 620.3
2273 Male, age 74, both hemispheres 586.2
1817 Female, age 42, unknown 513.0
2007 Male, age 72, unknown 460.9
1816 Male, age 51, unknown 385.0
1944 Female, age 72, unknown 373.3
Red nucleus
nTPM: 830.2
1865 Male, age 51, unknown 983.5
1904 Male, age 53, unknown 971.6
2227 Male, age 72, unknown 953.9
2769 Male, age 72, unknown 950.1
1821 Female, age 72, unknown 933.9
2823 Male, age 76, right hemisphere 878.6
2584 Male, age 75, left hemisphere 861.3
2785 Male, age 18, unknown 820.1
1954 Female, age 42, unknown 729.3
2503 Female, age 72, unknown 715.8
2588 Male, age 74, left hemisphere 663.4
2725 Female, age 75, unknown 501.1
Substantia nigra
nTPM: 555.4
2583 Male, age 75, right hemisphere 707.1
1851 Male, age 51, unknown 633.1
1889 Female, age 72, unknown 572.0
2665 Male, age 74, both hemispheres 568.8
2590 Female, age 75, unknown 561.1
1941 Male, age 53, unknown 547.3
2241 Male, age 72, unknown 516.0
1916 Female, age 42, unknown 508.9
2699 Male, age 18, unknown 477.5
2409 Female, age 72, unknown 462.0
Superior colliculus
nTPM: 718.1
1913 Female, age 42, unknown 965.5
2664 Male, age 75, both hemispheres 899.4
1995 Male, age 72, unknown 883.2
1895 Male, age 76, right hemisphere 747.7
1839 Male, age 51, unknown 735.6
2587 Male, age 74, left hemisphere 708.0
2668 Female, age 75, unknown 634.4
1796 Male, age 53, unknown 597.4
2261 Male, age 18, unknown 544.9
2087 Female, age 72, unknown 464.9
Ventral tegmental area
nTPM: 763.1
2223 Female, age 72, unknown 1199.5
2021 Male, age 53, unknown 766.3
1942 Male, age 51, unknown 746.1
2410 Female, age 72, unknown 681.9
1915 Female, age 42, unknown 608.3
2218 Male, age 76, both hemispheres 576.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 487.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 487.1
Samples: 139

Max nTPM: 1087.8
Min nTPM: 155.0
Std nTPM: 191.9
Median nTPM: 463.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1087.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 958.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 931.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 900.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 885.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 845.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 843.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 826.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 812.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 800.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 796.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 517.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 517.9
FF:10158-103A5 76 years, female 517.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 395.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 330.1
Samples: 4

Max nTPM: 431.3
Min nTPM: 225.1
Sample A Female 342.5
Sample B Female 225.1
Sample C Male 321.4
Sample D Male 431.3
Midbrain
nTPM: 396.0
Samples: 4

Max nTPM: 735.0
Min nTPM: 224.7
Sample A Female 735.0
Sample B Female 351.0
Sample C Male 273.1
Sample D Male 224.7
Periaqueductal gray
nTPM: 277.6
Samples: 3

Max nTPM: 321.5
Min nTPM: 237.7
Sample B Female 321.5
Sample C Male 273.6
Sample D Male 237.7
Superior colliculi
nTPM: 268.7
Samples: 4

Max nTPM: 333.9
Min nTPM: 153.6
Sample A Female 271.5
Sample B Female 153.6
Sample C Male 315.7
Sample D Male 333.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 992.2
Samples: 4

Max nTPM: 1010.1
Min nTPM: 971.9
Sample A Male 971.9
Sample B Male 980.0
Sample C Female 1006.7
Sample D Female 1010.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.7
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 17.6
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 13.8
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1
Midbrain
Expression energy: 15.7
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 17.6
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 13.8
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1

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