MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.3 nTPM
HPA Brain:47.1 nTPM
GTEx:43.3 nTPM
FANTOM5:125.0 Scaled Tags Per Million
Pig:53.9 nTPM
Mouse:13.2 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.6
2411 Female, age 72, unknown 48.7
1830 Male, age 51, unknown 45.1
2019 Male, age 18, unknown 44.0
1870 Female, age 42, unknown 41.7
1833 Male, age 53, unknown 40.7
2219 Male, age 76, both hemispheres 33.3
2828 Female, age 72, unknown 31.5
2586 Male, age 75, left hemisphere 25.5
1827 Male, age 72, unknown 23.2
2666 Male, age 74, left hemisphere 22.8
Dorsal raphe nucleus
nTPM: 26.2
2750 Male, age 76, both hemispheres 49.4
2016 Female, age 72, unknown 25.7
1828 Male, age 53, unknown 22.7
2298 Female, age 72, unknown 18.1
2047 Male, age 72, unknown 15.1
Inferior colliculus
nTPM: 21.7
1890 Male, age 53, unknown 23.4
2097 Female, age 72, unknown 21.3
1848 Female, age 42, unknown 21.1
2849 Male, age 72, unknown 21.1
Median raphe nucleus
nTPM: 19.9
2220 Male, age 76, midline 19.9
Periaquaductal grey, anterior
nTPM: 18.2
2502 Female, age 75, unknown 21.1
1947 Male, age 18, unknown 18.5
1795 Male, age 51, unknown 14.9
Periaquaductal grey, dorsal
nTPM: 16.1
2464 Female, age 72, unknown 26.5
1831 Male, age 72, unknown 16.9
1840 Male, age 53, unknown 11.4
2850 Male, age 76, both hemispheres 9.4
Periaquaductal grey, lateral
nTPM: 16.3
2272 Male, age 74, both hemispheres 19.7
2053 Male, age 18, unknown 19.2
2140 Male, age 76, both hemispheres 10.2
Pretectal area
nTPM: 21.7
1815 Male, age 53, unknown 32.6
2316 Male, age 76, right hemisphere 30.6
2407 Male, age 75, both hemispheres 26.3
2007 Male, age 72, unknown 25.6
1817 Female, age 42, unknown 24.4
2825 Male, age 18, unknown 21.8
2273 Male, age 74, both hemispheres 19.7
2667 Female, age 75, unknown 17.2
2224 Female, age 72, unknown 17.0
1816 Male, age 51, unknown 11.7
1944 Female, age 72, unknown 11.5
Red nucleus
nTPM: 47.1
1865 Male, age 51, unknown 61.3
2823 Male, age 76, right hemisphere 60.6
1904 Male, age 53, unknown 57.3
2769 Male, age 72, unknown 52.0
1821 Female, age 72, unknown 51.0
2227 Male, age 72, unknown 50.3
2785 Male, age 18, unknown 47.3
2503 Female, age 72, unknown 44.4
1954 Female, age 42, unknown 40.3
2588 Male, age 74, left hemisphere 36.3
2725 Female, age 75, unknown 34.4
2584 Male, age 75, left hemisphere 30.1
Substantia nigra
nTPM: 26.9
2409 Female, age 72, unknown 41.4
1851 Male, age 51, unknown 34.9
2583 Male, age 75, right hemisphere 33.8
2590 Female, age 75, unknown 31.8
1889 Female, age 72, unknown 27.7
2699 Male, age 18, unknown 24.8
2241 Male, age 72, unknown 19.6
1941 Male, age 53, unknown 19.0
2665 Male, age 74, both hemispheres 18.5
1916 Female, age 42, unknown 17.4
Superior colliculus
nTPM: 29.7
1995 Male, age 72, unknown 50.3
1913 Female, age 42, unknown 46.1
1895 Male, age 76, right hemisphere 36.5
2668 Female, age 75, unknown 30.9
2587 Male, age 74, left hemisphere 30.8
1839 Male, age 51, unknown 27.0
1796 Male, age 53, unknown 24.4
2664 Male, age 75, both hemispheres 18.5
2261 Male, age 18, unknown 16.5
2087 Female, age 72, unknown 16.0
Ventral tegmental area
nTPM: 31.5
2223 Female, age 72, unknown 50.2
2410 Female, age 72, unknown 41.1
1942 Male, age 51, unknown 26.9
2021 Male, age 53, unknown 25.0
1915 Female, age 42, unknown 23.5
2218 Male, age 76, both hemispheres 22.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.3
Samples: 139

Max nTPM: 152.4
Min nTPM: 9.6
Std nTPM: 26.0
Median nTPM: 35.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 152.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 149.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 143.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 116.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 115.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 101.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 98.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 95.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 90.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 79.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 76.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.0
FF:10158-103A5 76 years, female 125.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.6
Samples: 4

Max nTPM: 72.5
Min nTPM: 31.7
Sample A Female 42.2
Sample B Female 31.9
Sample C Male 31.7
Sample D Male 72.5
Midbrain
nTPM: 53.9
Samples: 4

Max nTPM: 136.4
Min nTPM: 21.4
Sample A Female 136.4
Sample B Female 35.2
Sample C Male 22.5
Sample D Male 21.4
Periaqueductal gray
nTPM: 25.6
Samples: 3

Max nTPM: 29.7
Min nTPM: 18.8
Sample B Female 28.4
Sample C Male 18.8
Sample D Male 29.7
Superior colliculi
nTPM: 39.0
Samples: 4

Max nTPM: 42.5
Min nTPM: 36.1
Sample A Female 41.2
Sample B Female 36.1
Sample C Male 36.3
Sample D Male 42.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.2
Samples: 4

Max nTPM: 15.1
Min nTPM: 12.3
Sample A Male 13.1
Sample B Male 12.3
Sample C Female 12.4
Sample D Female 15.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
70612725 Antisense, RP_050725_01_C03, Mouse strain C57BL/6J (56 days, male) 4.3
513489 Antisense, RP_040810_01_H09, Mouse strain C57BL/6J (56 days, male) 0.6

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