MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:180.3 nTPM
HPA Brain:152.2 nTPM
GTEx:180.3 nTPM
FANTOM5:440.7 Scaled Tags Per Million
Pig:280.0 nTPM
Mouse:812.6 nTPM
Allen mouse:25.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 152.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 132.5
1870 Female, age 42, unknown 167.0
2019 Male, age 18, unknown 153.9
2828 Female, age 72, unknown 143.1
1833 Male, age 53, unknown 142.7
2411 Female, age 72, unknown 136.5
1830 Male, age 51, unknown 134.2
2219 Male, age 76, both hemispheres 123.0
2586 Male, age 75, left hemisphere 119.6
1827 Male, age 72, unknown 119.4
2666 Male, age 74, left hemisphere 85.1
Dorsal raphe nucleus
nTPM: 152.2
2750 Male, age 76, both hemispheres 166.2
2298 Female, age 72, unknown 158.8
2047 Male, age 72, unknown 158.5
1828 Male, age 53, unknown 154.2
2016 Female, age 72, unknown 123.4
Inferior colliculus
nTPM: 135.1
1848 Female, age 42, unknown 143.1
2097 Female, age 72, unknown 137.3
2849 Male, age 72, unknown 135.6
1890 Male, age 53, unknown 124.6
Median raphe nucleus
nTPM: 131.8
2220 Male, age 76, midline 131.8
Periaquaductal grey, anterior
nTPM: 121.3
2502 Female, age 75, unknown 131.0
1947 Male, age 18, unknown 117.3
1795 Male, age 51, unknown 115.6
Periaquaductal grey, dorsal
nTPM: 113.6
1840 Male, age 53, unknown 115.7
2850 Male, age 76, both hemispheres 115.5
2464 Female, age 72, unknown 113.8
1831 Male, age 72, unknown 109.2
Periaquaductal grey, lateral
nTPM: 121.5
2272 Male, age 74, both hemispheres 156.7
2053 Male, age 18, unknown 117.8
2140 Male, age 76, both hemispheres 90.0
Pretectal area
nTPM: 145.1
2667 Female, age 75, unknown 183.6
1817 Female, age 42, unknown 167.3
2007 Male, age 72, unknown 155.5
2224 Female, age 72, unknown 153.6
2273 Male, age 74, both hemispheres 152.1
1944 Female, age 72, unknown 146.9
1815 Male, age 53, unknown 139.0
1816 Male, age 51, unknown 134.3
2825 Male, age 18, unknown 122.7
2316 Male, age 76, right hemisphere 121.4
2407 Male, age 75, both hemispheres 119.7
Red nucleus
nTPM: 148.9
2823 Male, age 76, right hemisphere 184.3
1821 Female, age 72, unknown 167.4
1904 Male, age 53, unknown 160.5
1954 Female, age 42, unknown 157.3
2769 Male, age 72, unknown 157.2
1865 Male, age 51, unknown 155.9
2785 Male, age 18, unknown 154.8
2227 Male, age 72, unknown 152.2
2503 Female, age 72, unknown 151.6
2725 Female, age 75, unknown 129.0
2584 Male, age 75, left hemisphere 118.7
2588 Male, age 74, left hemisphere 97.4
Substantia nigra
nTPM: 116.4
1889 Female, age 72, unknown 155.6
1851 Male, age 51, unknown 134.0
1916 Female, age 42, unknown 133.6
1941 Male, age 53, unknown 126.6
2699 Male, age 18, unknown 124.2
2409 Female, age 72, unknown 107.0
2583 Male, age 75, right hemisphere 101.1
2241 Male, age 72, unknown 94.1
2590 Female, age 75, unknown 94.0
2665 Male, age 74, both hemispheres 94.0
Superior colliculus
nTPM: 134.1
1895 Male, age 76, right hemisphere 152.2
1913 Female, age 42, unknown 150.5
1995 Male, age 72, unknown 146.6
2587 Male, age 74, left hemisphere 146.0
2668 Female, age 75, unknown 134.1
2087 Female, age 72, unknown 132.5
1839 Male, age 51, unknown 131.0
1796 Male, age 53, unknown 125.9
2261 Male, age 18, unknown 120.6
2664 Male, age 75, both hemispheres 101.3
Ventral tegmental area
nTPM: 136.2
2223 Female, age 72, unknown 172.8
2410 Female, age 72, unknown 144.3
2218 Male, age 76, both hemispheres 135.1
1915 Female, age 42, unknown 126.9
1942 Male, age 51, unknown 121.0
2021 Male, age 53, unknown 117.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 180.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 180.3
Samples: 139

Max nTPM: 385.7
Min nTPM: 98.5
Std nTPM: 50.7
Median nTPM: 169.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 385.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 326.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 312.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 298.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 298.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 293.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 293.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 273.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 273.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 272.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 269.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 440.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 440.7
FF:10158-103A5 76 years, female 440.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 280.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 225.6
Samples: 4

Max nTPM: 261.1
Min nTPM: 140.3
Sample A Female 260.8
Sample B Female 140.3
Sample C Male 240.0
Sample D Male 261.1
Midbrain
nTPM: 280.0
Samples: 4

Max nTPM: 455.2
Min nTPM: 211.2
Sample A Female 455.2
Sample B Female 211.2
Sample C Male 225.2
Sample D Male 228.5
Periaqueductal gray
nTPM: 203.4
Samples: 3

Max nTPM: 227.1
Min nTPM: 187.6
Sample B Female 195.4
Sample C Male 227.1
Sample D Male 187.6
Superior colliculi
nTPM: 246.9
Samples: 4

Max nTPM: 299.6
Min nTPM: 144.7
Sample A Female 299.6
Sample B Female 144.7
Sample C Male 269.7
Sample D Male 273.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 812.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 812.6
Samples: 4

Max nTPM: 845.9
Min nTPM: 787.1
Sample A Male 803.1
Sample B Male 787.1
Sample C Female 814.2
Sample D Female 845.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 25.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 25.2
544902 Antisense, RP_040420_01_H11, Mouse strain C57BL/6J (56 days, male) 26.5
75694901 Antisense, RP_060518_04_A09, Mouse strain C57BL/6J (56 days, male) 23.8

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