MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:69.7 nTPM
HPA Brain:52.9 nTPM
GTEx:69.7 nTPM
FANTOM5:54.2 Scaled Tags Per Million
Pig:10.3 nTPM
Mouse:52.2 nTPM
Allen mouse:18.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.0
2586 Male, age 75, left hemisphere 64.6
2411 Female, age 72, unknown 48.6
1827 Male, age 72, unknown 46.4
2219 Male, age 76, both hemispheres 46.3
2019 Male, age 18, unknown 46.0
2666 Male, age 74, left hemisphere 43.0
2828 Female, age 72, unknown 42.6
1870 Female, age 42, unknown 42.0
1833 Male, age 53, unknown 41.3
1830 Male, age 51, unknown 39.0
Dorsal raphe nucleus
nTPM: 46.1
2298 Female, age 72, unknown 52.0
2047 Male, age 72, unknown 49.7
1828 Male, age 53, unknown 44.2
2750 Male, age 76, both hemispheres 44.1
2016 Female, age 72, unknown 40.5
Inferior colliculus
nTPM: 39.3
2097 Female, age 72, unknown 42.6
1890 Male, age 53, unknown 41.8
1848 Female, age 42, unknown 37.6
2849 Male, age 72, unknown 35.3
Median raphe nucleus
nTPM: 44.6
2220 Male, age 76, midline 44.6
Periaquaductal grey, anterior
nTPM: 51.3
2502 Female, age 75, unknown 53.1
1947 Male, age 18, unknown 51.6
1795 Male, age 51, unknown 49.1
Periaquaductal grey, dorsal
nTPM: 37.5
2464 Female, age 72, unknown 39.3
1831 Male, age 72, unknown 38.3
1840 Male, age 53, unknown 38.2
2850 Male, age 76, both hemispheres 34.3
Periaquaductal grey, lateral
nTPM: 35.0
2053 Male, age 18, unknown 36.4
2272 Male, age 74, both hemispheres 35.2
2140 Male, age 76, both hemispheres 33.3
Pretectal area
nTPM: 44.9
2007 Male, age 72, unknown 56.0
1816 Male, age 51, unknown 55.6
1817 Female, age 42, unknown 51.5
1944 Female, age 72, unknown 48.3
1815 Male, age 53, unknown 47.0
2667 Female, age 75, unknown 42.6
2825 Male, age 18, unknown 41.2
2224 Female, age 72, unknown 40.9
2316 Male, age 76, right hemisphere 39.5
2273 Male, age 74, both hemispheres 36.5
2407 Male, age 75, both hemispheres 35.4
Red nucleus
nTPM: 44.2
1821 Female, age 72, unknown 49.3
2584 Male, age 75, left hemisphere 46.6
1904 Male, age 53, unknown 46.4
1865 Male, age 51, unknown 46.3
2769 Male, age 72, unknown 46.2
2227 Male, age 72, unknown 44.5
2503 Female, age 72, unknown 44.5
2785 Male, age 18, unknown 43.9
2588 Male, age 74, left hemisphere 43.2
2725 Female, age 75, unknown 42.0
1954 Female, age 42, unknown 41.3
2823 Male, age 76, right hemisphere 36.6
Substantia nigra
nTPM: 52.9
1916 Female, age 42, unknown 76.1
1851 Male, age 51, unknown 64.4
2665 Male, age 74, both hemispheres 57.2
2409 Female, age 72, unknown 51.6
2699 Male, age 18, unknown 50.2
2583 Male, age 75, right hemisphere 49.0
1941 Male, age 53, unknown 48.6
1889 Female, age 72, unknown 47.3
2590 Female, age 75, unknown 44.9
2241 Male, age 72, unknown 39.4
Superior colliculus
nTPM: 44.1
2668 Female, age 75, unknown 53.6
1796 Male, age 53, unknown 48.8
2664 Male, age 75, both hemispheres 48.2
2261 Male, age 18, unknown 46.4
2087 Female, age 72, unknown 46.1
1995 Male, age 72, unknown 42.8
1895 Male, age 76, right hemisphere 41.9
1913 Female, age 42, unknown 40.0
2587 Male, age 74, left hemisphere 36.9
1839 Male, age 51, unknown 35.9
Ventral tegmental area
nTPM: 46.9
1915 Female, age 42, unknown 55.7
2410 Female, age 72, unknown 50.0
2218 Male, age 76, both hemispheres 48.7
1942 Male, age 51, unknown 42.6
2021 Male, age 53, unknown 42.5
2223 Female, age 72, unknown 42.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 69.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.7
Samples: 139

Max nTPM: 145.1
Min nTPM: 24.5
Std nTPM: 18.4
Median nTPM: 67.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 145.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 124.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 118.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 110.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 107.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 107.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 102.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 100.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 96.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 94.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 94.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.2
FF:10158-103A5 76 years, female 54.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.3
Samples: 4

Max nTPM: 11.1
Min nTPM: 9.8
Sample A Female 11.1
Sample B Female 9.8
Sample C Male 10.5
Sample D Male 9.9
Midbrain
nTPM: 10.2
Samples: 4

Max nTPM: 10.4
Min nTPM: 9.9
Sample A Female 9.9
Sample B Female 10.4
Sample C Male 10.0
Sample D Male 10.4
Periaqueductal gray
nTPM: 9.7
Samples: 3

Max nTPM: 10.2
Min nTPM: 9.3
Sample B Female 10.2
Sample C Male 9.6
Sample D Male 9.3
Superior colliculi
nTPM: 9.9
Samples: 4

Max nTPM: 10.1
Min nTPM: 9.7
Sample A Female 10.0
Sample B Female 9.7
Sample C Male 10.1
Sample D Male 9.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 52.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 52.2
Samples: 4

Max nTPM: 62.5
Min nTPM: 45.4
Sample A Male 62.5
Sample B Male 45.4
Sample C Female 46.5
Sample D Female 54.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 18.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.8
512769 Antisense, RP_040809_02_D07, Mouse strain C57BL/6J (56 days, male) 18.8

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