MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.1 nTPM
HPA Brain:55.9 nTPM
GTEx:64.1 nTPM
FANTOM5:56.5 Scaled Tags Per Million
Pig:129.2 nTPM
Mouse:86.7 nTPM
Allen mouse:6.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.0
2411 Female, age 72, unknown 55.4
1870 Female, age 42, unknown 53.5
1833 Male, age 53, unknown 52.3
1827 Male, age 72, unknown 51.7
1830 Male, age 51, unknown 51.7
2019 Male, age 18, unknown 49.9
2219 Male, age 76, both hemispheres 48.0
2666 Male, age 74, left hemisphere 46.6
2586 Male, age 75, left hemisphere 45.4
2828 Female, age 72, unknown 45.0
Dorsal raphe nucleus
nTPM: 51.8
2298 Female, age 72, unknown 61.2
2750 Male, age 76, both hemispheres 53.3
1828 Male, age 53, unknown 50.0
2047 Male, age 72, unknown 49.6
2016 Female, age 72, unknown 45.0
Inferior colliculus
nTPM: 51.3
2097 Female, age 72, unknown 55.5
2849 Male, age 72, unknown 51.2
1848 Female, age 42, unknown 51.1
1890 Male, age 53, unknown 47.3
Median raphe nucleus
nTPM: 55.9
2220 Male, age 76, midline 55.9
Periaquaductal grey, anterior
nTPM: 55.6
1947 Male, age 18, unknown 57.2
2502 Female, age 75, unknown 57.2
1795 Male, age 51, unknown 52.3
Periaquaductal grey, dorsal
nTPM: 46.6
1840 Male, age 53, unknown 50.5
2850 Male, age 76, both hemispheres 48.8
2464 Female, age 72, unknown 43.5
1831 Male, age 72, unknown 43.3
Periaquaductal grey, lateral
nTPM: 46.8
2272 Male, age 74, both hemispheres 54.3
2140 Male, age 76, both hemispheres 43.2
2053 Male, age 18, unknown 43.0
Pretectal area
nTPM: 52.2
1817 Female, age 42, unknown 58.4
2273 Male, age 74, both hemispheres 57.3
1816 Male, age 51, unknown 56.5
2007 Male, age 72, unknown 54.7
2224 Female, age 72, unknown 53.6
1944 Female, age 72, unknown 52.8
2667 Female, age 75, unknown 52.8
1815 Male, age 53, unknown 52.5
2825 Male, age 18, unknown 50.1
2316 Male, age 76, right hemisphere 46.0
2407 Male, age 75, both hemispheres 40.0
Red nucleus
nTPM: 49.2
2725 Female, age 75, unknown 56.5
2503 Female, age 72, unknown 52.0
1821 Female, age 72, unknown 51.8
1904 Male, age 53, unknown 50.1
2785 Male, age 18, unknown 49.7
1954 Female, age 42, unknown 49.5
2823 Male, age 76, right hemisphere 49.2
2227 Male, age 72, unknown 48.8
2769 Male, age 72, unknown 48.6
1865 Male, age 51, unknown 46.5
2588 Male, age 74, left hemisphere 45.0
2584 Male, age 75, left hemisphere 42.8
Substantia nigra
nTPM: 55.9
1916 Female, age 42, unknown 68.4
2241 Male, age 72, unknown 64.5
1889 Female, age 72, unknown 60.4
1851 Male, age 51, unknown 57.9
1941 Male, age 53, unknown 54.7
2409 Female, age 72, unknown 53.2
2699 Male, age 18, unknown 53.2
2665 Male, age 74, both hemispheres 52.5
2590 Female, age 75, unknown 48.9
2583 Male, age 75, right hemisphere 45.6
Superior colliculus
nTPM: 49.5
1796 Male, age 53, unknown 56.2
2261 Male, age 18, unknown 55.3
1895 Male, age 76, right hemisphere 53.4
2587 Male, age 74, left hemisphere 51.8
2087 Female, age 72, unknown 49.6
1913 Female, age 42, unknown 49.4
1839 Male, age 51, unknown 49.2
2668 Female, age 75, unknown 46.4
1995 Male, age 72, unknown 44.0
2664 Male, age 75, both hemispheres 40.0
Ventral tegmental area
nTPM: 53.7
2410 Female, age 72, unknown 58.5
1915 Female, age 42, unknown 57.8
2218 Male, age 76, both hemispheres 57.5
2223 Female, age 72, unknown 52.2
1942 Male, age 51, unknown 51.2
2021 Male, age 53, unknown 45.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.1
Samples: 139

Max nTPM: 110.6
Min nTPM: 30.8
Std nTPM: 13.7
Median nTPM: 62.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 110.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 99.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 95.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 94.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 90.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 88.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 88.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 87.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 85.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 84.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 83.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.5
FF:10158-103A5 76 years, female 56.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 129.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 119.7
Samples: 4

Max nTPM: 159.0
Min nTPM: 93.1
Sample A Female 159.0
Sample B Female 107.8
Sample C Male 118.7
Sample D Male 93.1
Midbrain
nTPM: 128.4
Samples: 4

Max nTPM: 173.8
Min nTPM: 107.1
Sample A Female 173.8
Sample B Female 107.1
Sample C Male 120.1
Sample D Male 112.5
Periaqueductal gray
nTPM: 99.5
Samples: 3

Max nTPM: 111.0
Min nTPM: 93.7
Sample B Female 93.8
Sample C Male 111.0
Sample D Male 93.7
Superior colliculi
nTPM: 129.3
Samples: 4

Max nTPM: 162.0
Min nTPM: 98.4
Sample A Female 162.0
Sample B Female 98.4
Sample C Male 138.4
Sample D Male 118.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 86.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 86.7
Samples: 4

Max nTPM: 89.6
Min nTPM: 84.5
Sample A Male 89.6
Sample B Male 84.5
Sample C Female 85.3
Sample D Female 87.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.3
69174298 Antisense, RP_050329_02_B03, Mouse strain C57BL/6J (56 days, male) 6.3

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