MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.3 nTPM
HPA Brain:13.4 nTPM
GTEx:9.3 nTPM
FANTOM5:8.3 Scaled Tags Per Million
Pig:5.7 nTPM
Mouse:13.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.1
2586 Male, age 75, left hemisphere 20.2
2666 Male, age 74, left hemisphere 12.7
2411 Female, age 72, unknown 11.9
1833 Male, age 53, unknown 11.2
1827 Male, age 72, unknown 10.4
1870 Female, age 42, unknown 9.7
2828 Female, age 72, unknown 9.6
1830 Male, age 51, unknown 9.3
2019 Male, age 18, unknown 8.8
2219 Male, age 76, both hemispheres 7.4
Dorsal raphe nucleus
nTPM: 12.2
2047 Male, age 72, unknown 15.9
2298 Female, age 72, unknown 14.2
2750 Male, age 76, both hemispheres 12.1
1828 Male, age 53, unknown 10.4
2016 Female, age 72, unknown 8.6
Inferior colliculus
nTPM: 11.5
1848 Female, age 42, unknown 13.7
2849 Male, age 72, unknown 13.0
1890 Male, age 53, unknown 10.6
2097 Female, age 72, unknown 8.8
Median raphe nucleus
nTPM: 9.6
2220 Male, age 76, midline 9.6
Periaquaductal grey, anterior
nTPM: 13.4
1947 Male, age 18, unknown 16.8
1795 Male, age 51, unknown 12.2
2502 Female, age 75, unknown 11.3
Periaquaductal grey, dorsal
nTPM: 10.8
1840 Male, age 53, unknown 12.3
2850 Male, age 76, both hemispheres 12.3
2464 Female, age 72, unknown 9.6
1831 Male, age 72, unknown 9.1
Periaquaductal grey, lateral
nTPM: 9.7
2140 Male, age 76, both hemispheres 13.2
2053 Male, age 18, unknown 9.5
2272 Male, age 74, both hemispheres 6.4
Pretectal area
nTPM: 10.6
1817 Female, age 42, unknown 13.8
2667 Female, age 75, unknown 12.5
2316 Male, age 76, right hemisphere 12.4
2007 Male, age 72, unknown 12.2
2825 Male, age 18, unknown 12.1
2224 Female, age 72, unknown 10.9
1816 Male, age 51, unknown 10.5
1815 Male, age 53, unknown 9.8
1944 Female, age 72, unknown 9.7
2407 Male, age 75, both hemispheres 7.2
2273 Male, age 74, both hemispheres 5.6
Red nucleus
nTPM: 11.3
2823 Male, age 76, right hemisphere 16.7
1954 Female, age 42, unknown 13.3
2588 Male, age 74, left hemisphere 12.7
2725 Female, age 75, unknown 11.8
1821 Female, age 72, unknown 11.7
2227 Male, age 72, unknown 11.3
2769 Male, age 72, unknown 11.0
2584 Male, age 75, left hemisphere 10.8
1904 Male, age 53, unknown 10.7
1865 Male, age 51, unknown 10.3
2503 Female, age 72, unknown 8.9
2785 Male, age 18, unknown 6.9
Substantia nigra
nTPM: 10.2
2699 Male, age 18, unknown 12.0
2665 Male, age 74, both hemispheres 11.6
1916 Female, age 42, unknown 11.1
1889 Female, age 72, unknown 10.6
2583 Male, age 75, right hemisphere 10.5
1851 Male, age 51, unknown 10.2
2241 Male, age 72, unknown 10.1
1941 Male, age 53, unknown 9.4
2409 Female, age 72, unknown 8.5
2590 Female, age 75, unknown 7.7
Superior colliculus
nTPM: 9.7
1796 Male, age 53, unknown 12.1
1895 Male, age 76, right hemisphere 11.6
2664 Male, age 75, both hemispheres 11.5
2668 Female, age 75, unknown 11.3
1839 Male, age 51, unknown 10.9
2261 Male, age 18, unknown 10.3
2087 Female, age 72, unknown 9.9
1913 Female, age 42, unknown 6.8
2587 Male, age 74, left hemisphere 6.7
1995 Male, age 72, unknown 6.3
Ventral tegmental area
nTPM: 10.5
1942 Male, age 51, unknown 12.0
2223 Female, age 72, unknown 11.2
2218 Male, age 76, both hemispheres 10.9
2021 Male, age 53, unknown 10.0
1915 Female, age 42, unknown 9.9
2410 Female, age 72, unknown 8.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.3
Samples: 139

Max nTPM: 37.6
Min nTPM: 2.6
Std nTPM: 5.1
Median nTPM: 8.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 37.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 32.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 27.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 23.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 22.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 22.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 20.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 18.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 18.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 17.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 17.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.3
FF:10158-103A5 76 years, female 8.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.5
Samples: 4

Max nTPM: 6.2
Min nTPM: 3.8
Sample A Female 5.9
Sample B Female 6.0
Sample C Male 6.2
Sample D Male 3.8
Midbrain
nTPM: 4.9
Samples: 4

Max nTPM: 6.3
Min nTPM: 2.6
Sample A Female 2.6
Sample B Female 5.2
Sample C Male 5.4
Sample D Male 6.3
Periaqueductal gray
nTPM: 5.7
Samples: 3

Max nTPM: 6.9
Min nTPM: 4.0
Sample B Female 6.1
Sample C Male 6.9
Sample D Male 4.0
Superior colliculi
nTPM: 5.7
Samples: 4

Max nTPM: 7.5
Min nTPM: 4.2
Sample A Female 6.6
Sample B Female 7.5
Sample C Male 4.2
Sample D Male 4.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 15.0
Min nTPM: 11.9
Sample A Male 15.0
Sample B Male 12.9
Sample C Female 12.5
Sample D Female 11.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
532663 Antisense, RP_040825_01_B09, Mouse strain C57BL/6J (56 days, male) 0.1

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