MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.9 nTPM
HPA Brain:64.9 nTPM
GTEx:38.9 nTPM
FANTOM5:34.2 Scaled Tags Per Million
Pig:19.6 nTPM
Mouse:21.7 nTPM
Allen mouse:7.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.7
2586 Male, age 75, left hemisphere 91.2
2828 Female, age 72, unknown 64.8
2019 Male, age 18, unknown 59.7
1833 Male, age 53, unknown 55.1
1827 Male, age 72, unknown 52.5
2666 Male, age 74, left hemisphere 51.7
1870 Female, age 42, unknown 51.4
2411 Female, age 72, unknown 48.9
1830 Male, age 51, unknown 47.9
2219 Male, age 76, both hemispheres 33.7
Dorsal raphe nucleus
nTPM: 53.6
1828 Male, age 53, unknown 66.6
2047 Male, age 72, unknown 57.8
2016 Female, age 72, unknown 52.9
2298 Female, age 72, unknown 45.8
2750 Male, age 76, both hemispheres 44.9
Inferior colliculus
nTPM: 59.2
1890 Male, age 53, unknown 63.1
1848 Female, age 42, unknown 62.2
2849 Male, age 72, unknown 57.7
2097 Female, age 72, unknown 53.8
Median raphe nucleus
nTPM: 37.6
2220 Male, age 76, midline 37.6
Periaquaductal grey, anterior
nTPM: 51.5
1795 Male, age 51, unknown 56.8
1947 Male, age 18, unknown 52.9
2502 Female, age 75, unknown 45.0
Periaquaductal grey, dorsal
nTPM: 56.7
2850 Male, age 76, both hemispheres 65.7
2464 Female, age 72, unknown 59.5
1831 Male, age 72, unknown 52.3
1840 Male, age 53, unknown 49.4
Periaquaductal grey, lateral
nTPM: 60.8
2140 Male, age 76, both hemispheres 67.3
2053 Male, age 18, unknown 64.5
2272 Male, age 74, both hemispheres 50.6
Pretectal area
nTPM: 60.0
2667 Female, age 75, unknown 89.6
1817 Female, age 42, unknown 68.3
1815 Male, age 53, unknown 59.6
1816 Male, age 51, unknown 58.9
1944 Female, age 72, unknown 58.5
2273 Male, age 74, both hemispheres 57.9
2007 Male, age 72, unknown 55.7
2407 Male, age 75, both hemispheres 54.9
2825 Male, age 18, unknown 53.5
2316 Male, age 76, right hemisphere 52.9
2224 Female, age 72, unknown 49.8
Red nucleus
nTPM: 64.9
1821 Female, age 72, unknown 76.9
2769 Male, age 72, unknown 72.0
1954 Female, age 42, unknown 71.5
1904 Male, age 53, unknown 71.0
2588 Male, age 74, left hemisphere 68.2
2227 Male, age 72, unknown 67.5
2823 Male, age 76, right hemisphere 66.6
1865 Male, age 51, unknown 66.4
2503 Female, age 72, unknown 63.3
2584 Male, age 75, left hemisphere 55.6
2785 Male, age 18, unknown 51.0
2725 Female, age 75, unknown 48.7
Substantia nigra
nTPM: 57.8
2699 Male, age 18, unknown 67.9
1916 Female, age 42, unknown 64.9
2583 Male, age 75, right hemisphere 63.0
1889 Female, age 72, unknown 61.3
1851 Male, age 51, unknown 60.1
2665 Male, age 74, both hemispheres 57.1
2590 Female, age 75, unknown 56.0
2409 Female, age 72, unknown 51.7
1941 Male, age 53, unknown 49.7
2241 Male, age 72, unknown 46.9
Superior colliculus
nTPM: 56.0
1995 Male, age 72, unknown 64.6
2664 Male, age 75, both hemispheres 64.4
2087 Female, age 72, unknown 59.6
2668 Female, age 75, unknown 56.9
1913 Female, age 42, unknown 54.9
2261 Male, age 18, unknown 54.2
1839 Male, age 51, unknown 53.8
1796 Male, age 53, unknown 51.0
2587 Male, age 74, left hemisphere 50.5
1895 Male, age 76, right hemisphere 50.2
Ventral tegmental area
nTPM: 51.4
1915 Female, age 42, unknown 56.4
2410 Female, age 72, unknown 55.3
2223 Female, age 72, unknown 52.7
1942 Male, age 51, unknown 50.6
2021 Male, age 53, unknown 48.7
2218 Male, age 76, both hemispheres 44.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.9
Samples: 139

Max nTPM: 145.8
Min nTPM: 11.2
Std nTPM: 22.5
Median nTPM: 31.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 145.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 122.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 108.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 107.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 103.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 90.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 86.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 83.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 82.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 81.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 81.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.2
FF:10158-103A5 76 years, female 34.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.8
Samples: 4

Max nTPM: 21.3
Min nTPM: 14.5
Sample A Female 20.9
Sample B Female 14.6
Sample C Male 21.3
Sample D Male 14.5
Midbrain
nTPM: 18.5
Samples: 4

Max nTPM: 23.5
Min nTPM: 14.3
Sample A Female 14.3
Sample B Female 19.0
Sample C Male 23.5
Sample D Male 17.0
Periaqueductal gray
nTPM: 16.7
Samples: 3

Max nTPM: 20.4
Min nTPM: 13.3
Sample B Female 20.4
Sample C Male 16.4
Sample D Male 13.3
Superior colliculi
nTPM: 19.6
Samples: 4

Max nTPM: 24.1
Min nTPM: 16.7
Sample A Female 18.3
Sample B Female 16.7
Sample C Male 24.1
Sample D Male 19.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.7
Samples: 4

Max nTPM: 24.8
Min nTPM: 19.6
Sample A Male 24.8
Sample B Male 21.4
Sample C Female 19.6
Sample D Female 21.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
71325450 Antisense, RP_050825_02_H07, Mouse strain C57BL/6J (56 days, male) 7.5

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