MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:139.3 nTPM
HPA Brain:150.3 nTPM
GTEx:139.3 nTPM
FANTOM5:101.0 Scaled Tags Per Million
Pig:0.3 nTPM
Mouse:81.7 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 150.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 112.6
2411 Female, age 72, unknown 136.7
1827 Male, age 72, unknown 136.1
1870 Female, age 42, unknown 119.6
1833 Male, age 53, unknown 114.2
2219 Male, age 76, both hemispheres 112.7
2666 Male, age 74, left hemisphere 107.0
2828 Female, age 72, unknown 105.5
2019 Male, age 18, unknown 100.4
1830 Male, age 51, unknown 99.3
2586 Male, age 75, left hemisphere 94.7
Dorsal raphe nucleus
nTPM: 133.2
2298 Female, age 72, unknown 165.1
2047 Male, age 72, unknown 138.2
1828 Male, age 53, unknown 127.7
2750 Male, age 76, both hemispheres 121.6
2016 Female, age 72, unknown 113.4
Inferior colliculus
nTPM: 127.2
2097 Female, age 72, unknown 140.0
2849 Male, age 72, unknown 138.8
1848 Female, age 42, unknown 124.5
1890 Male, age 53, unknown 105.4
Median raphe nucleus
nTPM: 150.3
2220 Male, age 76, midline 150.3
Periaquaductal grey, anterior
nTPM: 126.2
1947 Male, age 18, unknown 133.1
2502 Female, age 75, unknown 123.3
1795 Male, age 51, unknown 122.2
Periaquaductal grey, dorsal
nTPM: 122.0
1840 Male, age 53, unknown 152.3
2850 Male, age 76, both hemispheres 119.8
2464 Female, age 72, unknown 111.4
1831 Male, age 72, unknown 104.7
Periaquaductal grey, lateral
nTPM: 113.8
2272 Male, age 74, both hemispheres 119.4
2140 Male, age 76, both hemispheres 114.6
2053 Male, age 18, unknown 107.4
Pretectal area
nTPM: 119.0
2224 Female, age 72, unknown 150.4
2825 Male, age 18, unknown 132.2
1817 Female, age 42, unknown 123.8
1816 Male, age 51, unknown 123.3
2007 Male, age 72, unknown 122.7
1944 Female, age 72, unknown 122.1
2273 Male, age 74, both hemispheres 119.7
2667 Female, age 75, unknown 111.6
1815 Male, age 53, unknown 108.1
2316 Male, age 76, right hemisphere 105.4
2407 Male, age 75, both hemispheres 89.7
Red nucleus
nTPM: 102.2
2725 Female, age 75, unknown 135.3
2588 Male, age 74, left hemisphere 116.6
1821 Female, age 72, unknown 115.9
2503 Female, age 72, unknown 107.6
1954 Female, age 42, unknown 101.3
2227 Male, age 72, unknown 100.6
2769 Male, age 72, unknown 99.5
2584 Male, age 75, left hemisphere 99.0
2785 Male, age 18, unknown 93.3
1865 Male, age 51, unknown 86.7
2823 Male, age 76, right hemisphere 85.7
1904 Male, age 53, unknown 84.7
Substantia nigra
nTPM: 132.4
1916 Female, age 42, unknown 176.2
1941 Male, age 53, unknown 151.2
2241 Male, age 72, unknown 147.3
2409 Female, age 72, unknown 144.2
1851 Male, age 51, unknown 139.9
2699 Male, age 18, unknown 127.5
1889 Female, age 72, unknown 125.5
2665 Male, age 74, both hemispheres 118.5
2590 Female, age 75, unknown 105.9
2583 Male, age 75, right hemisphere 88.2
Superior colliculus
nTPM: 108.1
1839 Male, age 51, unknown 133.6
1796 Male, age 53, unknown 129.4
2261 Male, age 18, unknown 117.6
1895 Male, age 76, right hemisphere 115.6
2087 Female, age 72, unknown 113.9
2587 Male, age 74, left hemisphere 113.3
2668 Female, age 75, unknown 106.1
2664 Male, age 75, both hemispheres 90.1
1913 Female, age 42, unknown 84.6
1995 Male, age 72, unknown 76.5
Ventral tegmental area
nTPM: 133.0
1915 Female, age 42, unknown 152.7
2218 Male, age 76, both hemispheres 146.7
2410 Female, age 72, unknown 145.4
1942 Male, age 51, unknown 127.1
2021 Male, age 53, unknown 117.6
2223 Female, age 72, unknown 108.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 139.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 139.3
Samples: 139

Max nTPM: 275.2
Min nTPM: 77.2
Std nTPM: 34.6
Median nTPM: 130.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 275.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 252.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 246.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 229.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 222.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 208.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 208.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 206.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 206.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 203.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 195.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.0
FF:10158-103A5 76 years, female 101.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.0
Sample A Female 0.3
Sample B Female 0.1
Sample C Male 0.4
Sample D Male 0.0
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.2
Sample B Female 0.2
Sample C Male 0.2
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.2
Samples: 3

Max nTPM: 0.4
Min nTPM: 0.0
Sample B Female 0.4
Sample C Male 0.2
Sample D Male 0.0
Superior colliculi
nTPM: 0.3
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.5
Sample C Male 0.6
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 81.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.7
Samples: 4

Max nTPM: 84.5
Min nTPM: 79.0
Sample A Male 84.5
Sample B Male 83.5
Sample C Female 79.0
Sample D Female 79.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
68633125 Antisense, RP_050125_02_D11, Mouse strain C57BL/6J (56 days, male) 1.3

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