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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
199.3
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 199.3
Samples: 152
Max nTPM: 435.6
Min nTPM: 8.3
Std nTPM: 77.3
Median nTPM: 193.1
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
435.6
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
400.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
391.9
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
388.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
381.0
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
329.2
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
323.3
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
311.2
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
310.1
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
309.8
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
308.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
305.4
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
304.8
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
302.6
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
302.5
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
300.4
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
299.5
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
295.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
293.5
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
288.9
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
287.3
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
283.8
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
276.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
276.6
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
273.5
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
272.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
272.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
270.2
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
267.3
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
266.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
261.9
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
260.5
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
259.8
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
257.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
257.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
254.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
252.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
251.6
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
249.7
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
249.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
248.8
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
248.2
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
245.4
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
244.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
244.4
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
244.0
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
243.5
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
239.5
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
238.4
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
237.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
235.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
234.7
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
232.6
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
226.0
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
225.1
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
224.0
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
224.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
223.4
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
222.7
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
222.7
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
221.6
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
221.1
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
218.7
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
218.1
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
216.6
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
215.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
214.8
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
212.6
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
212.6
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
209.8
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
209.2
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
199.7
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
196.1
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
194.0
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
193.6
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
193.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
193.0
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
192.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
191.7
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
190.4
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
190.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
188.7
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
186.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
183.9
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
183.0
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
182.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
179.1
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
177.5
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
175.1
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
173.5
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
171.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
170.7
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
166.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
164.3
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
162.4
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
161.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
161.5
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
159.8
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
159.5
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
158.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
158.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
158.3
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
156.3
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
153.3
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
152.7
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
152.5
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
151.9
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
149.9
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
149.5
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
145.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
144.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
144.0
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
142.5
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
137.8
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
137.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
136.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
135.6
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
134.6
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
134.4
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
132.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
129.6
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
128.0
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
127.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
127.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
127.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
125.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
123.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
122.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
122.0
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
121.1
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
119.4
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
118.5
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
117.0
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
117.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
116.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
113.2
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
109.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
109.6
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
104.8
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
102.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
102.2
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
101.2
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
100.1
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
92.7
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
89.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
83.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
79.7
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
63.6
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
53.5
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
41.2
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
30.1
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
8.3
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
318.9
Mouse sample
Sample description
nTPM
Amygdala nTPM: 318.9
Samples: 4
Max nTPM: 332.5
Min nTPM: 298.8
Sample A
Male
327.2
Sample B
Male
332.5
Sample C
Female
317.1
Sample D
Female
298.8
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.