MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.2 nTPM
HPA Brain:23.2 nTPM
GTEx:29.2 nTPM
FANTOM5:17.0 Scaled Tags Per Million
Mouse:53.1 nTPM
Allen mouse:5.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.7
2586 Male, age 75, left hemisphere 28.2
2828 Female, age 72, unknown 23.6
2666 Male, age 74, left hemisphere 21.6
1833 Male, age 53, unknown 20.9
1870 Female, age 42, unknown 20.8
1830 Male, age 51, unknown 20.4
1827 Male, age 72, unknown 20.3
2411 Female, age 72, unknown 17.9
2019 Male, age 18, unknown 17.5
2219 Male, age 76, both hemispheres 15.7
Dorsal raphe nucleus
nTPM: 19.8
2016 Female, age 72, unknown 25.1
1828 Male, age 53, unknown 20.9
2047 Male, age 72, unknown 19.4
2298 Female, age 72, unknown 17.6
2750 Male, age 76, both hemispheres 15.9
Inferior colliculus
nTPM: 18.7
2849 Male, age 72, unknown 22.0
1848 Female, age 42, unknown 18.8
1890 Male, age 53, unknown 18.0
2097 Female, age 72, unknown 16.1
Median raphe nucleus
nTPM: 15.2
2220 Male, age 76, midline 15.2
Periaquaductal grey, anterior
nTPM: 18.8
1795 Male, age 51, unknown 21.2
1947 Male, age 18, unknown 17.8
2502 Female, age 75, unknown 17.4
Periaquaductal grey, dorsal
nTPM: 22.0
2850 Male, age 76, both hemispheres 26.9
1840 Male, age 53, unknown 23.3
1831 Male, age 72, unknown 20.4
2464 Female, age 72, unknown 17.5
Periaquaductal grey, lateral
nTPM: 23.2
2140 Male, age 76, both hemispheres 25.8
2053 Male, age 18, unknown 24.1
2272 Male, age 74, both hemispheres 19.5
Pretectal area
nTPM: 19.2
2825 Male, age 18, unknown 23.6
2407 Male, age 75, both hemispheres 23.2
2273 Male, age 74, both hemispheres 21.1
2316 Male, age 76, right hemisphere 19.9
2224 Female, age 72, unknown 18.8
2667 Female, age 75, unknown 18.2
1817 Female, age 42, unknown 18.1
1815 Male, age 53, unknown 17.9
2007 Male, age 72, unknown 17.1
1816 Male, age 51, unknown 17.0
1944 Female, age 72, unknown 16.3
Red nucleus
nTPM: 20.7
2725 Female, age 75, unknown 22.6
2584 Male, age 75, left hemisphere 22.2
1865 Male, age 51, unknown 21.1
2588 Male, age 74, left hemisphere 20.9
2227 Male, age 72, unknown 20.7
1954 Female, age 42, unknown 20.6
1904 Male, age 53, unknown 20.5
1821 Female, age 72, unknown 20.4
2503 Female, age 72, unknown 20.0
2785 Male, age 18, unknown 19.9
2769 Male, age 72, unknown 19.7
2823 Male, age 76, right hemisphere 19.3
Substantia nigra
nTPM: 18.7
2583 Male, age 75, right hemisphere 22.3
2699 Male, age 18, unknown 21.3
2590 Female, age 75, unknown 20.5
2665 Male, age 74, both hemispheres 19.8
1941 Male, age 53, unknown 18.7
2409 Female, age 72, unknown 17.9
1851 Male, age 51, unknown 17.4
1916 Female, age 42, unknown 17.1
1889 Female, age 72, unknown 16.6
2241 Male, age 72, unknown 15.4
Superior colliculus
nTPM: 20.4
2664 Male, age 75, both hemispheres 27.5
1995 Male, age 72, unknown 25.9
1913 Female, age 42, unknown 20.7
1839 Male, age 51, unknown 20.4
2587 Male, age 74, left hemisphere 18.9
2668 Female, age 75, unknown 18.9
1796 Male, age 53, unknown 18.8
1895 Male, age 76, right hemisphere 18.6
2087 Female, age 72, unknown 17.6
2261 Male, age 18, unknown 17.2
Ventral tegmental area
nTPM: 16.9
1915 Female, age 42, unknown 18.3
1942 Male, age 51, unknown 17.4
2021 Male, age 53, unknown 17.1
2223 Female, age 72, unknown 16.6
2218 Male, age 76, both hemispheres 16.3
2410 Female, age 72, unknown 15.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.2
Samples: 139

Max nTPM: 52.9
Min nTPM: 10.8
Std nTPM: 8.0
Median nTPM: 28.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 52.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 51.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 46.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 46.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 44.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 44.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 43.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 42.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 42.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 41.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 41.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.0
FF:10158-103A5 76 years, female 17.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.1
Samples: 4

Max nTPM: 59.0
Min nTPM: 50.5
Sample A Male 51.7
Sample B Male 50.5
Sample C Female 51.2
Sample D Female 59.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
69059941 Antisense, RP_050317_04_F01, Mouse strain C57BL/6J (56 days, male) 5.6

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