MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:154.4 nTPM
HPA Brain:217.4 nTPM
GTEx:154.4 nTPM
FANTOM5:170.7 Scaled Tags Per Million
Pig:119.6 nTPM
Mouse:45.5 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 217.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 142.8
2828 Female, age 72, unknown 158.7
2411 Female, age 72, unknown 155.1
1870 Female, age 42, unknown 154.2
2019 Male, age 18, unknown 141.9
1830 Male, age 51, unknown 141.8
2219 Male, age 76, both hemispheres 141.4
2666 Male, age 74, left hemisphere 140.8
1833 Male, age 53, unknown 139.8
2586 Male, age 75, left hemisphere 135.5
1827 Male, age 72, unknown 119.2
Dorsal raphe nucleus
nTPM: 173.7
2047 Male, age 72, unknown 194.5
1828 Male, age 53, unknown 189.2
2750 Male, age 76, both hemispheres 179.0
2298 Female, age 72, unknown 154.7
2016 Female, age 72, unknown 151.0
Inferior colliculus
nTPM: 119.9
2849 Male, age 72, unknown 129.5
1848 Female, age 42, unknown 129.1
1890 Male, age 53, unknown 120.6
2097 Female, age 72, unknown 100.5
Median raphe nucleus
nTPM: 217.4
2220 Male, age 76, midline 217.4
Periaquaductal grey, anterior
nTPM: 137.0
1947 Male, age 18, unknown 142.1
1795 Male, age 51, unknown 136.4
2502 Female, age 75, unknown 132.6
Periaquaductal grey, dorsal
nTPM: 136.5
2850 Male, age 76, both hemispheres 175.8
2464 Female, age 72, unknown 129.0
1840 Male, age 53, unknown 126.6
1831 Male, age 72, unknown 114.8
Periaquaductal grey, lateral
nTPM: 132.7
2272 Male, age 74, both hemispheres 148.1
2140 Male, age 76, both hemispheres 130.7
2053 Male, age 18, unknown 119.4
Pretectal area
nTPM: 126.2
2667 Female, age 75, unknown 145.3
1817 Female, age 42, unknown 139.5
2825 Male, age 18, unknown 138.5
2273 Male, age 74, both hemispheres 135.7
2224 Female, age 72, unknown 134.3
1815 Male, age 53, unknown 124.0
2407 Male, age 75, both hemispheres 121.9
1944 Female, age 72, unknown 119.2
2007 Male, age 72, unknown 114.7
2316 Male, age 76, right hemisphere 110.2
1816 Male, age 51, unknown 104.7
Red nucleus
nTPM: 151.3
1821 Female, age 72, unknown 168.5
1865 Male, age 51, unknown 165.2
1954 Female, age 42, unknown 161.0
2227 Male, age 72, unknown 157.7
2823 Male, age 76, right hemisphere 155.5
2769 Male, age 72, unknown 149.4
2588 Male, age 74, left hemisphere 148.2
2503 Female, age 72, unknown 145.1
2785 Male, age 18, unknown 142.4
2725 Female, age 75, unknown 142.0
1904 Male, age 53, unknown 141.7
2584 Male, age 75, left hemisphere 138.6
Substantia nigra
nTPM: 165.8
2699 Male, age 18, unknown 199.6
1851 Male, age 51, unknown 196.0
1916 Female, age 42, unknown 194.1
1941 Male, age 53, unknown 188.5
2241 Male, age 72, unknown 178.5
2665 Male, age 74, both hemispheres 167.2
2590 Female, age 75, unknown 141.8
1889 Female, age 72, unknown 141.1
2583 Male, age 75, right hemisphere 136.2
2409 Female, age 72, unknown 115.6
Superior colliculus
nTPM: 124.5
2587 Male, age 74, left hemisphere 142.7
2664 Male, age 75, both hemispheres 140.6
1995 Male, age 72, unknown 137.4
2668 Female, age 75, unknown 135.2
1839 Male, age 51, unknown 124.9
1913 Female, age 42, unknown 124.4
1796 Male, age 53, unknown 122.1
2087 Female, age 72, unknown 114.2
2261 Male, age 18, unknown 104.2
1895 Male, age 76, right hemisphere 99.6
Ventral tegmental area
nTPM: 180.5
2223 Female, age 72, unknown 213.5
2218 Male, age 76, both hemispheres 187.6
1915 Female, age 42, unknown 184.9
2410 Female, age 72, unknown 166.6
2021 Male, age 53, unknown 166.4
1942 Male, age 51, unknown 163.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 154.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 154.4
Samples: 139

Max nTPM: 420.3
Min nTPM: 81.0
Std nTPM: 47.0
Median nTPM: 143.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 420.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 372.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 287.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 280.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 273.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 256.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 239.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 237.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 232.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 231.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 229.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 170.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 170.7
FF:10158-103A5 76 years, female 170.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 119.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 119.6
Samples: 4

Max nTPM: 144.0
Min nTPM: 94.9
Sample A Female 144.0
Sample B Female 124.6
Sample C Male 114.9
Sample D Male 94.9
Midbrain
nTPM: 97.6
Samples: 4

Max nTPM: 174.0
Min nTPM: 54.8
Sample A Female 174.0
Sample B Female 93.3
Sample C Male 68.3
Sample D Male 54.8
Periaqueductal gray
nTPM: 80.3
Samples: 3

Max nTPM: 88.2
Min nTPM: 69.9
Sample B Female 82.9
Sample C Male 88.2
Sample D Male 69.9
Superior colliculi
nTPM: 94.9
Samples: 4

Max nTPM: 124.5
Min nTPM: 70.2
Sample A Female 105.1
Sample B Female 124.5
Sample C Male 70.2
Sample D Male 79.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.5
Samples: 4

Max nTPM: 50.3
Min nTPM: 41.9
Sample A Male 50.3
Sample B Male 45.0
Sample C Female 41.9
Sample D Female 44.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
77620794 Antisense, RP_070129_03_G08, Mouse strain C57BL/6J (56 days, male) 1.7

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