MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.9 nTPM
HPA Brain:16.1 nTPM
GTEx:11.9 nTPM
FANTOM5:1.1 Scaled Tags Per Million
Pig:2.9 nTPM
Mouse:1.4 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.9
2586 Male, age 75, left hemisphere 26.8
2828 Female, age 72, unknown 15.4
1827 Male, age 72, unknown 15.0
2666 Male, age 74, left hemisphere 14.4
2219 Male, age 76, both hemispheres 13.0
2411 Female, age 72, unknown 12.4
1833 Male, age 53, unknown 12.0
1870 Female, age 42, unknown 11.5
1830 Male, age 51, unknown 11.1
2019 Male, age 18, unknown 7.1
Dorsal raphe nucleus
nTPM: 13.2
2047 Male, age 72, unknown 16.5
2298 Female, age 72, unknown 16.4
2016 Female, age 72, unknown 12.4
2750 Male, age 76, both hemispheres 11.2
1828 Male, age 53, unknown 9.4
Inferior colliculus
nTPM: 6.2
1848 Female, age 42, unknown 10.9
2849 Male, age 72, unknown 5.9
1890 Male, age 53, unknown 5.3
2097 Female, age 72, unknown 2.7
Median raphe nucleus
nTPM: 10.0
2220 Male, age 76, midline 10.0
Periaquaductal grey, anterior
nTPM: 16.1
1795 Male, age 51, unknown 21.8
1947 Male, age 18, unknown 17.6
2502 Female, age 75, unknown 9.0
Periaquaductal grey, dorsal
nTPM: 7.2
2464 Female, age 72, unknown 8.6
1831 Male, age 72, unknown 7.3
1840 Male, age 53, unknown 7.0
2850 Male, age 76, both hemispheres 5.9
Periaquaductal grey, lateral
nTPM: 11.8
2053 Male, age 18, unknown 14.5
2272 Male, age 74, both hemispheres 14.0
2140 Male, age 76, both hemispheres 7.0
Pretectal area
nTPM: 12.9
2224 Female, age 72, unknown 27.0
2825 Male, age 18, unknown 15.6
2667 Female, age 75, unknown 14.9
2007 Male, age 72, unknown 12.1
1815 Male, age 53, unknown 11.7
1817 Female, age 42, unknown 11.7
2273 Male, age 74, both hemispheres 11.1
1944 Female, age 72, unknown 9.8
1816 Male, age 51, unknown 9.6
2316 Male, age 76, right hemisphere 9.0
2407 Male, age 75, both hemispheres 9.0
Red nucleus
nTPM: 12.4
2588 Male, age 74, left hemisphere 18.3
2769 Male, age 72, unknown 16.0
2227 Male, age 72, unknown 14.8
2584 Male, age 75, left hemisphere 14.5
1904 Male, age 53, unknown 14.3
2503 Female, age 72, unknown 13.0
1954 Female, age 42, unknown 12.7
1865 Male, age 51, unknown 11.1
2823 Male, age 76, right hemisphere 9.2
2785 Male, age 18, unknown 8.4
1821 Female, age 72, unknown 8.2
2725 Female, age 75, unknown 8.0
Substantia nigra
nTPM: 10.9
2583 Male, age 75, right hemisphere 15.2
2665 Male, age 74, both hemispheres 14.4
2699 Male, age 18, unknown 13.9
2590 Female, age 75, unknown 13.0
1916 Female, age 42, unknown 12.0
1851 Male, age 51, unknown 11.3
1889 Female, age 72, unknown 9.4
2409 Female, age 72, unknown 6.6
1941 Male, age 53, unknown 6.5
2241 Male, age 72, unknown 6.5
Superior colliculus
nTPM: 11.2
1796 Male, age 53, unknown 19.3
2668 Female, age 75, unknown 17.3
2664 Male, age 75, both hemispheres 13.9
1839 Male, age 51, unknown 12.0
2261 Male, age 18, unknown 10.9
2087 Female, age 72, unknown 9.4
2587 Male, age 74, left hemisphere 8.5
1895 Male, age 76, right hemisphere 7.7
1913 Female, age 42, unknown 6.9
1995 Male, age 72, unknown 6.4
Ventral tegmental area
nTPM: 12.0
2223 Female, age 72, unknown 14.8
2021 Male, age 53, unknown 14.5
2410 Female, age 72, unknown 11.1
1942 Male, age 51, unknown 10.8
1915 Female, age 42, unknown 10.3
2218 Male, age 76, both hemispheres 10.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.9
Samples: 139

Max nTPM: 44.4
Min nTPM: 0.7
Std nTPM: 7.5
Median nTPM: 10.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 44.4
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 32.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 29.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 28.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 28.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 27.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 27.6
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 26.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 26.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 25.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 25.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.1
FF:10158-103A5 76 years, female 1.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.8
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.2
Sample A Female 3.3
Sample B Female 2.3
Sample C Male 2.2
Sample D Male 3.2
Midbrain
nTPM: 2.9
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.0
Sample A Female 2.8
Sample B Female 2.9
Sample C Male 2.0
Sample D Male 3.9
Periaqueductal gray
nTPM: 1.9
Samples: 3

Max nTPM: 2.3
Min nTPM: 1.6
Sample B Female 2.3
Sample C Male 1.9
Sample D Male 1.6
Superior colliculi
nTPM: 2.2
Samples: 4

Max nTPM: 3.7
Min nTPM: 1.2
Sample A Female 3.7
Sample B Female 1.8
Sample C Male 1.2
Sample D Male 2.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.4
Samples: 4

Max nTPM: 1.6
Min nTPM: 1.1
Sample A Male 1.2
Sample B Male 1.5
Sample C Female 1.1
Sample D Female 1.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71492952 Antisense, RP_050913_01_H03, Mouse strain C57BL/6J (56 days, male) 0.3
73636038 Antisense, RP_050913_01_H03, Mouse strain C57BL/6J (56 days, male) 0.0

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