MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.0 nTPM
HPA Brain:42.3 nTPM
GTEx:23.0 nTPM
FANTOM5:48.3 Scaled Tags Per Million
Pig:58.6 nTPM
Mouse:45.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.4
2019 Male, age 18, unknown 42.1
2586 Male, age 75, left hemisphere 36.7
1827 Male, age 72, unknown 35.6
2666 Male, age 74, left hemisphere 35.3
2411 Female, age 72, unknown 33.4
2828 Female, age 72, unknown 31.7
1870 Female, age 42, unknown 29.9
2219 Male, age 76, both hemispheres 27.9
1833 Male, age 53, unknown 26.0
1830 Male, age 51, unknown 25.0
Dorsal raphe nucleus
nTPM: 35.8
2298 Female, age 72, unknown 50.9
2047 Male, age 72, unknown 39.1
1828 Male, age 53, unknown 33.8
2750 Male, age 76, both hemispheres 31.6
2016 Female, age 72, unknown 23.8
Inferior colliculus
nTPM: 32.3
2097 Female, age 72, unknown 39.9
1890 Male, age 53, unknown 31.3
1848 Female, age 42, unknown 29.1
2849 Male, age 72, unknown 28.8
Median raphe nucleus
nTPM: 42.3
2220 Male, age 76, midline 42.3
Periaquaductal grey, anterior
nTPM: 35.9
1795 Male, age 51, unknown 37.7
1947 Male, age 18, unknown 37.3
2502 Female, age 75, unknown 32.7
Periaquaductal grey, dorsal
nTPM: 30.2
1840 Male, age 53, unknown 36.4
2850 Male, age 76, both hemispheres 29.1
2464 Female, age 72, unknown 27.8
1831 Male, age 72, unknown 27.6
Periaquaductal grey, lateral
nTPM: 30.1
2272 Male, age 74, both hemispheres 33.0
2140 Male, age 76, both hemispheres 31.1
2053 Male, age 18, unknown 26.0
Pretectal area
nTPM: 41.7
2007 Male, age 72, unknown 57.2
1817 Female, age 42, unknown 51.2
1944 Female, age 72, unknown 51.2
2667 Female, age 75, unknown 47.3
1816 Male, age 51, unknown 43.9
1815 Male, age 53, unknown 40.4
2224 Female, age 72, unknown 39.6
2273 Male, age 74, both hemispheres 36.2
2407 Male, age 75, both hemispheres 33.7
2825 Male, age 18, unknown 28.9
2316 Male, age 76, right hemisphere 28.8
Red nucleus
nTPM: 30.6
2785 Male, age 18, unknown 41.9
2584 Male, age 75, left hemisphere 35.2
1821 Female, age 72, unknown 32.3
2769 Male, age 72, unknown 31.7
2503 Female, age 72, unknown 30.9
1865 Male, age 51, unknown 29.8
2588 Male, age 74, left hemisphere 28.9
2725 Female, age 75, unknown 28.2
2227 Male, age 72, unknown 28.0
1904 Male, age 53, unknown 27.2
1954 Female, age 42, unknown 26.6
2823 Male, age 76, right hemisphere 26.6
Substantia nigra
nTPM: 38.2
1916 Female, age 42, unknown 51.3
1941 Male, age 53, unknown 49.8
2583 Male, age 75, right hemisphere 43.3
1851 Male, age 51, unknown 42.8
1889 Female, age 72, unknown 42.3
2409 Female, age 72, unknown 33.4
2241 Male, age 72, unknown 30.5
2665 Male, age 74, both hemispheres 30.0
2699 Male, age 18, unknown 29.9
2590 Female, age 75, unknown 29.0
Superior colliculus
nTPM: 35.4
2668 Female, age 75, unknown 45.6
2087 Female, age 72, unknown 45.0
2664 Male, age 75, both hemispheres 37.7
2261 Male, age 18, unknown 37.4
1796 Male, age 53, unknown 36.8
1839 Male, age 51, unknown 31.0
2587 Male, age 74, left hemisphere 30.6
1995 Male, age 72, unknown 30.5
1913 Female, age 42, unknown 30.2
1895 Male, age 76, right hemisphere 29.4
Ventral tegmental area
nTPM: 36.5
1942 Male, age 51, unknown 40.9
1915 Female, age 42, unknown 40.5
2410 Female, age 72, unknown 39.4
2218 Male, age 76, both hemispheres 37.0
2021 Male, age 53, unknown 31.1
2223 Female, age 72, unknown 30.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.0
Samples: 139

Max nTPM: 115.4
Min nTPM: 4.3
Std nTPM: 12.6
Median nTPM: 20.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 115.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 74.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 52.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 47.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 42.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 42.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 41.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 39.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 38.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 38.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 37.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.3
FF:10158-103A5 76 years, female 48.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.8
Samples: 4

Max nTPM: 70.2
Min nTPM: 42.9
Sample A Female 67.7
Sample B Female 46.2
Sample C Male 70.2
Sample D Male 42.9
Midbrain
nTPM: 53.2
Samples: 4

Max nTPM: 63.1
Min nTPM: 46.7
Sample A Female 55.0
Sample B Female 47.9
Sample C Male 63.1
Sample D Male 46.7
Periaqueductal gray
nTPM: 41.5
Samples: 3

Max nTPM: 49.5
Min nTPM: 35.7
Sample B Female 39.4
Sample C Male 49.5
Sample D Male 35.7
Superior colliculi
nTPM: 58.6
Samples: 4

Max nTPM: 60.8
Min nTPM: 54.5
Sample A Female 60.8
Sample B Female 58.5
Sample C Male 60.7
Sample D Male 54.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.9
Samples: 4

Max nTPM: 46.7
Min nTPM: 44.3
Sample A Male 46.7
Sample B Male 45.8
Sample C Female 44.3
Sample D Female 46.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
513013 Antisense, RP_040810_01_A04, Mouse strain C57BL/6J (56 days, male) 0.3

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