MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.3 nTPM
HPA Brain:15.0 nTPM
GTEx:7.3 nTPM
FANTOM5:21.6 Scaled Tags Per Million
Pig:5.7 nTPM
Mouse:2.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.3
1870 Female, age 42, unknown 16.8
1833 Male, age 53, unknown 16.5
1830 Male, age 51, unknown 14.8
2411 Female, age 72, unknown 14.8
2219 Male, age 76, both hemispheres 14.7
2019 Male, age 18, unknown 14.0
2828 Female, age 72, unknown 12.9
1827 Male, age 72, unknown 10.7
2666 Male, age 74, left hemisphere 9.7
2586 Male, age 75, left hemisphere 8.5
Dorsal raphe nucleus
nTPM: 12.6
2016 Female, age 72, unknown 14.6
2750 Male, age 76, both hemispheres 14.5
2298 Female, age 72, unknown 13.3
1828 Male, age 53, unknown 11.1
2047 Male, age 72, unknown 9.7
Inferior colliculus
nTPM: 10.3
1890 Male, age 53, unknown 11.1
2097 Female, age 72, unknown 10.3
1848 Female, age 42, unknown 10.1
2849 Male, age 72, unknown 9.8
Median raphe nucleus
nTPM: 8.0
2220 Male, age 76, midline 8.0
Periaquaductal grey, anterior
nTPM: 9.8
1795 Male, age 51, unknown 10.2
2502 Female, age 75, unknown 9.8
1947 Male, age 18, unknown 9.4
Periaquaductal grey, dorsal
nTPM: 10.7
2850 Male, age 76, both hemispheres 12.1
2464 Female, age 72, unknown 11.7
1831 Male, age 72, unknown 10.1
1840 Male, age 53, unknown 8.9
Periaquaductal grey, lateral
nTPM: 13.2
2272 Male, age 74, both hemispheres 15.1
2053 Male, age 18, unknown 12.2
2140 Male, age 76, both hemispheres 12.1
Pretectal area
nTPM: 11.0
2316 Male, age 76, right hemisphere 14.9
2273 Male, age 74, both hemispheres 13.7
2667 Female, age 75, unknown 12.8
2407 Male, age 75, both hemispheres 12.2
1815 Male, age 53, unknown 11.0
2825 Male, age 18, unknown 10.3
2224 Female, age 72, unknown 10.2
1817 Female, age 42, unknown 10.1
2007 Male, age 72, unknown 10.0
1944 Female, age 72, unknown 9.2
1816 Male, age 51, unknown 6.7
Red nucleus
nTPM: 15.0
1904 Male, age 53, unknown 18.8
2227 Male, age 72, unknown 18.4
2769 Male, age 72, unknown 18.3
1865 Male, age 51, unknown 17.0
1821 Female, age 72, unknown 15.9
2785 Male, age 18, unknown 15.7
2503 Female, age 72, unknown 14.9
2823 Male, age 76, right hemisphere 14.5
1954 Female, age 42, unknown 13.9
2584 Male, age 75, left hemisphere 11.3
2725 Female, age 75, unknown 11.0
2588 Male, age 74, left hemisphere 9.7
Substantia nigra
nTPM: 13.7
2409 Female, age 72, unknown 19.7
2699 Male, age 18, unknown 18.9
2590 Female, age 75, unknown 15.2
2665 Male, age 74, both hemispheres 15.1
1851 Male, age 51, unknown 15.0
2583 Male, age 75, right hemisphere 12.3
1941 Male, age 53, unknown 11.6
1916 Female, age 42, unknown 10.0
2241 Male, age 72, unknown 9.9
1889 Female, age 72, unknown 9.4
Superior colliculus
nTPM: 12.7
1995 Male, age 72, unknown 19.3
1913 Female, age 42, unknown 18.9
1839 Male, age 51, unknown 12.7
2587 Male, age 74, left hemisphere 12.5
2668 Female, age 75, unknown 12.1
1796 Male, age 53, unknown 11.4
1895 Male, age 76, right hemisphere 11.1
2087 Female, age 72, unknown 10.3
2664 Male, age 75, both hemispheres 9.8
2261 Male, age 18, unknown 8.7
Ventral tegmental area
nTPM: 13.4
2410 Female, age 72, unknown 16.8
2223 Female, age 72, unknown 14.0
1942 Male, age 51, unknown 13.2
1915 Female, age 42, unknown 12.4
2021 Male, age 53, unknown 12.3
2218 Male, age 76, both hemispheres 11.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.3
Samples: 139

Max nTPM: 18.8
Min nTPM: 2.1
Std nTPM: 2.7
Median nTPM: 6.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 18.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 16.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 15.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 14.0
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 13.7
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 12.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 12.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 12.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 11.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 11.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 11.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.6
FF:10158-103A5 76 years, female 21.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.1
Samples: 4

Max nTPM: 6.0
Min nTPM: 4.0
Sample A Female 4.2
Sample B Female 6.0
Sample C Male 4.0
Sample D Male 6.0
Midbrain
nTPM: 5.2
Samples: 4

Max nTPM: 6.6
Min nTPM: 4.5
Sample A Female 6.6
Sample B Female 4.7
Sample C Male 5.1
Sample D Male 4.5
Periaqueductal gray
nTPM: 4.8
Samples: 3

Max nTPM: 5.4
Min nTPM: 4.3
Sample B Female 5.4
Sample C Male 4.3
Sample D Male 4.8
Superior colliculi
nTPM: 5.7
Samples: 4

Max nTPM: 7.8
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 7.8
Sample C Male 5.3
Sample D Male 4.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.9
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.8
Sample A Male 2.8
Sample B Male 2.8
Sample C Female 2.8
Sample D Female 3.3

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