MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:185.2 nTPM
HPA Brain:170.8 nTPM
GTEx:185.2 nTPM
FANTOM5:205.9 Scaled Tags Per Million
Pig:27.0 nTPM
Mouse:49.1 nTPM
Allen mouse:4.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 170.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 160.2
2586 Male, age 75, left hemisphere 221.3
2666 Male, age 74, left hemisphere 178.2
2828 Female, age 72, unknown 172.2
2411 Female, age 72, unknown 170.4
1833 Male, age 53, unknown 168.6
1830 Male, age 51, unknown 168.1
1870 Female, age 42, unknown 148.1
1827 Male, age 72, unknown 140.1
2019 Male, age 18, unknown 122.9
2219 Male, age 76, both hemispheres 112.5
Dorsal raphe nucleus
nTPM: 130.3
2016 Female, age 72, unknown 146.7
2047 Male, age 72, unknown 137.2
2750 Male, age 76, both hemispheres 134.9
1828 Male, age 53, unknown 129.3
2298 Female, age 72, unknown 103.4
Inferior colliculus
nTPM: 115.4
2849 Male, age 72, unknown 123.5
1848 Female, age 42, unknown 120.9
1890 Male, age 53, unknown 115.0
2097 Female, age 72, unknown 102.3
Median raphe nucleus
nTPM: 104.0
2220 Male, age 76, midline 104.0
Periaquaductal grey, anterior
nTPM: 135.4
1947 Male, age 18, unknown 147.1
2502 Female, age 75, unknown 141.1
1795 Male, age 51, unknown 117.8
Periaquaductal grey, dorsal
nTPM: 116.2
2464 Female, age 72, unknown 144.7
1831 Male, age 72, unknown 123.2
2850 Male, age 76, both hemispheres 100.4
1840 Male, age 53, unknown 96.6
Periaquaductal grey, lateral
nTPM: 120.2
2053 Male, age 18, unknown 147.9
2272 Male, age 74, both hemispheres 106.5
2140 Male, age 76, both hemispheres 106.1
Pretectal area
nTPM: 125.8
2407 Male, age 75, both hemispheres 158.6
2825 Male, age 18, unknown 154.0
2316 Male, age 76, right hemisphere 150.5
1815 Male, age 53, unknown 145.5
2667 Female, age 75, unknown 137.0
2224 Female, age 72, unknown 117.6
1817 Female, age 42, unknown 116.7
1816 Male, age 51, unknown 102.0
2007 Male, age 72, unknown 102.0
1944 Female, age 72, unknown 101.8
2273 Male, age 74, both hemispheres 98.2
Red nucleus
nTPM: 170.8
1904 Male, age 53, unknown 199.7
2588 Male, age 74, left hemisphere 198.6
2584 Male, age 75, left hemisphere 179.4
1865 Male, age 51, unknown 177.4
2503 Female, age 72, unknown 176.3
2227 Male, age 72, unknown 168.1
2823 Male, age 76, right hemisphere 167.5
2769 Male, age 72, unknown 165.2
1954 Female, age 42, unknown 162.2
1821 Female, age 72, unknown 160.7
2725 Female, age 75, unknown 157.1
2785 Male, age 18, unknown 137.9
Substantia nigra
nTPM: 146.0
2583 Male, age 75, right hemisphere 175.3
2409 Female, age 72, unknown 160.0
2665 Male, age 74, both hemispheres 157.0
1851 Male, age 51, unknown 155.5
2699 Male, age 18, unknown 155.5
2590 Female, age 75, unknown 151.5
2241 Male, age 72, unknown 148.4
1941 Male, age 53, unknown 126.1
1916 Female, age 42, unknown 121.9
1889 Female, age 72, unknown 108.7
Superior colliculus
nTPM: 148.6
1913 Female, age 42, unknown 187.1
2664 Male, age 75, both hemispheres 173.6
1995 Male, age 72, unknown 166.5
1839 Male, age 51, unknown 161.8
2587 Male, age 74, left hemisphere 157.3
1895 Male, age 76, right hemisphere 135.8
2668 Female, age 75, unknown 131.0
1796 Male, age 53, unknown 130.2
2261 Male, age 18, unknown 127.7
2087 Female, age 72, unknown 115.3
Ventral tegmental area
nTPM: 126.5
2410 Female, age 72, unknown 137.8
1942 Male, age 51, unknown 132.9
2021 Male, age 53, unknown 131.5
2223 Female, age 72, unknown 123.3
1915 Female, age 42, unknown 123.1
2218 Male, age 76, both hemispheres 110.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 185.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 185.2
Samples: 139

Max nTPM: 520.4
Min nTPM: 76.9
Std nTPM: 64.0
Median nTPM: 172.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 520.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 380.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 365.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 361.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 332.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 322.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 307.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 299.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 292.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 290.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 286.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 205.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 205.9
FF:10158-103A5 76 years, female 205.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.2
Samples: 4

Max nTPM: 34.4
Min nTPM: 20.0
Sample A Female 21.8
Sample B Female 20.0
Sample C Male 24.6
Sample D Male 34.4
Midbrain
nTPM: 25.3
Samples: 4

Max nTPM: 30.0
Min nTPM: 17.5
Sample A Female 17.5
Sample B Female 24.9
Sample C Male 30.0
Sample D Male 28.7
Periaqueductal gray
nTPM: 22.4
Samples: 3

Max nTPM: 23.3
Min nTPM: 21.3
Sample B Female 21.3
Sample C Male 23.3
Sample D Male 22.7
Superior colliculi
nTPM: 27.0
Samples: 4

Max nTPM: 31.2
Min nTPM: 22.8
Sample A Female 23.9
Sample B Female 22.8
Sample C Male 30.1
Sample D Male 31.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 49.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.2
Samples: 4

Max nTPM: 51.0
Min nTPM: 46.2
Sample A Male 50.8
Sample B Male 46.2
Sample C Female 48.7
Sample D Female 51.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
76003377 Antisense, RP_060608_02_D04, Mouse strain C57BL/6J (56 days, male) 4.9

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