MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.7 nTPM
HPA Brain:70.7 nTPM
GTEx:26.7 nTPM
FANTOM5:14.5 Scaled Tags Per Million
Pig:22.3 nTPM
Mouse:26.3 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.5
2019 Male, age 18, unknown 60.7
2219 Male, age 76, both hemispheres 53.9
2586 Male, age 75, left hemisphere 46.5
2411 Female, age 72, unknown 42.6
2666 Male, age 74, left hemisphere 40.5
1827 Male, age 72, unknown 36.9
1833 Male, age 53, unknown 35.9
1830 Male, age 51, unknown 34.3
1870 Female, age 42, unknown 32.3
2828 Female, age 72, unknown 31.0
Dorsal raphe nucleus
nTPM: 46.6
1828 Male, age 53, unknown 62.0
2047 Male, age 72, unknown 49.2
2298 Female, age 72, unknown 46.4
2016 Female, age 72, unknown 40.2
2750 Male, age 76, both hemispheres 35.2
Inferior colliculus
nTPM: 56.8
1890 Male, age 53, unknown 76.5
2097 Female, age 72, unknown 72.1
1848 Female, age 42, unknown 42.5
2849 Male, age 72, unknown 36.2
Median raphe nucleus
nTPM: 48.8
2220 Male, age 76, midline 48.8
Periaquaductal grey, anterior
nTPM: 42.4
2502 Female, age 75, unknown 55.6
1947 Male, age 18, unknown 39.1
1795 Male, age 51, unknown 32.6
Periaquaductal grey, dorsal
nTPM: 33.9
1831 Male, age 72, unknown 38.1
2464 Female, age 72, unknown 34.6
1840 Male, age 53, unknown 32.8
2850 Male, age 76, both hemispheres 30.0
Periaquaductal grey, lateral
nTPM: 29.8
2272 Male, age 74, both hemispheres 30.9
2140 Male, age 76, both hemispheres 30.5
2053 Male, age 18, unknown 27.9
Pretectal area
nTPM: 40.0
2007 Male, age 72, unknown 51.8
1817 Female, age 42, unknown 51.6
2667 Female, age 75, unknown 45.9
1944 Female, age 72, unknown 45.2
1816 Male, age 51, unknown 38.5
2224 Female, age 72, unknown 36.5
1815 Male, age 53, unknown 35.8
2316 Male, age 76, right hemisphere 34.7
2273 Male, age 74, both hemispheres 34.6
2407 Male, age 75, both hemispheres 33.1
2825 Male, age 18, unknown 32.5
Red nucleus
nTPM: 50.6
1821 Female, age 72, unknown 74.7
1954 Female, age 42, unknown 57.0
2769 Male, age 72, unknown 56.2
2227 Male, age 72, unknown 56.1
2823 Male, age 76, right hemisphere 50.7
2785 Male, age 18, unknown 50.6
1904 Male, age 53, unknown 49.5
1865 Male, age 51, unknown 48.5
2588 Male, age 74, left hemisphere 45.4
2503 Female, age 72, unknown 44.8
2584 Male, age 75, left hemisphere 42.8
2725 Female, age 75, unknown 31.4
Substantia nigra
nTPM: 70.7
1916 Female, age 42, unknown 116.9
2241 Male, age 72, unknown 90.6
1851 Male, age 51, unknown 86.1
2665 Male, age 74, both hemispheres 69.8
2699 Male, age 18, unknown 69.5
2409 Female, age 72, unknown 68.0
1941 Male, age 53, unknown 67.0
1889 Female, age 72, unknown 58.2
2590 Female, age 75, unknown 42.2
2583 Male, age 75, right hemisphere 39.0
Superior colliculus
nTPM: 36.8
2668 Female, age 75, unknown 57.1
2664 Male, age 75, both hemispheres 45.8
2087 Female, age 72, unknown 43.6
1895 Male, age 76, right hemisphere 41.2
1839 Male, age 51, unknown 38.4
2587 Male, age 74, left hemisphere 35.6
1796 Male, age 53, unknown 34.4
2261 Male, age 18, unknown 30.7
1995 Male, age 72, unknown 20.9
1913 Female, age 42, unknown 20.5
Ventral tegmental area
nTPM: 62.5
2218 Male, age 76, both hemispheres 78.1
1915 Female, age 42, unknown 78.0
2410 Female, age 72, unknown 77.0
1942 Male, age 51, unknown 67.0
2021 Male, age 53, unknown 41.0
2223 Female, age 72, unknown 34.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.7
Samples: 139

Max nTPM: 93.2
Min nTPM: 4.6
Std nTPM: 17.4
Median nTPM: 21.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 93.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 88.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 75.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 69.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 63.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 63.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 62.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 60.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 59.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 58.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 55.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.5
FF:10158-103A5 76 years, female 14.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.3
Samples: 4

Max nTPM: 20.3
Min nTPM: 11.4
Sample A Female 17.0
Sample B Female 12.4
Sample C Male 20.3
Sample D Male 11.4
Midbrain
nTPM: 20.6
Samples: 4

Max nTPM: 36.1
Min nTPM: 9.0
Sample A Female 9.0
Sample B Female 11.9
Sample C Male 36.1
Sample D Male 25.4
Periaqueductal gray
nTPM: 12.1
Samples: 3

Max nTPM: 14.7
Min nTPM: 10.5
Sample B Female 11.1
Sample C Male 14.7
Sample D Male 10.5
Superior colliculi
nTPM: 22.4
Samples: 4

Max nTPM: 31.3
Min nTPM: 18.0
Sample A Female 19.0
Sample B Female 18.0
Sample C Male 31.3
Sample D Male 21.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.3
Samples: 4

Max nTPM: 27.5
Min nTPM: 25.1
Sample A Male 25.1
Sample B Male 26.3
Sample C Female 26.4
Sample D Female 27.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
69548852 Antisense, RP_050426_02_D08, Mouse strain C57BL/6J (56 days, male) 1.3
72472765 Antisense, RP_051101_02_C11, Mouse strain C57BL/6J (56 days, male) 1.2

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