We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MLC1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Cluster
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Interacting gene
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • MLC1
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:211.2 nTPM
FANTOM5:131.5 Scaled Tags Per Million
Pig:178.1 nTPM
Mouse:166.5 nTPM
Allen mouse:2.0 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 211.2
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 102.0
2497 Male, age 66, unknown 162.5
2032 Female, age 42, unknown 95.4
2396 Male, age 61, right hemisphere 48.1
Centromedial thalamic nucleus
nTPM: 174.9
2279 Female, age 85, left hemisphere 225.2
2401 Male, age 76, right hemisphere 124.6
Habenula
nTPM: 168.8
2276 Male, age 66, unknown 184.4
1957 Male, age 80, both hemispheres 174.3
2252 Male, age 62, unknown 168.0
2203 Male, age 61, left hemisphere 148.4
Lateral geniculate body
nTPM: 143.2
2857 Male, age 74, right hemisphere 239.0
2659 Male, age 66, unknown 183.6
2399 Male, age 61, left hemisphere 146.2
2035 Female, age 72, unknown 141.9
2841 Male, age 80, both hemispheres 134.0
2575 Female, age 94, right hemisphere 129.4
1953 Male, age 62, unknown 94.8
2106 Female, age 67, right hemisphere 77.2
Lateral thalamic nuclei
nTPM: 168.4
2573 Female, age 94, left hemisphere 200.8
2577 Male, age 74, both hemispheres 195.8
2661 Female, age 72, unknown 183.5
1903 Male, age 76, left hemisphere 159.3
2765 Female, age 67, both hemispheres 102.8
Medial dorsal thalamic nucleus
nTPM: 181.0
2572 Female, age 94, right hemisphere 234.8
1810 Male, age 48, unknown 232.7
2039 Female, age 72, unknown 218.3
2492 Male, age 75, right hemisphere 217.7
2402 Female, age 67, both hemispheres 194.0
2576 Male, age 74, both hemispheres 187.6
2026 Male, age 62, unknown 180.1
2498 Male, age 66, unknown 179.1
2283 Male, age 80, right hemisphere 155.8
1859 Male, age 76, both hemispheres 153.6
2660 Female, age 72, unknown 145.6
1930 Female, age 42, unknown 132.3
1971 Male, age 61, right hemisphere 121.5
Medial geniculate body
nTPM: 195.9
2571 Male, age 75, right hemisphere 317.7
2650 Female, age 94, left hemisphere 215.7
2217 Female, age 72, unknown 186.0
2049 Male, age 76, both hemispheres 180.0
2207 Male, age 80, right hemisphere 176.5
2657 Male, age 74, right hemisphere 161.5
1811 Female, age 42, unknown 134.2
Nucleus reuniens
nTPM: 139.9
2205 Male, age 80, left hemisphere 180.5
2210 Female, age 85, left hemisphere 126.3
2212 Female, age 67, left hemisphere 112.8
Nucleus rhomboideus
nTPM: 177.8
2206 Male, age 80, both hemispheres 199.0
2213 Female, age 67, left hemisphere 178.4
2280 Female, age 85, left hemisphere 155.9
Posterior thalamic nucleus
nTPM: 211.2
2649 Female, age 94, both hemispheres 286.3
2655 Male, age 74, right hemisphere 266.2
2495 Female, age 67, right hemisphere 202.2
2266 Male, age 76, right hemisphere 90.2
Pulvinar
nTPM: 153.0
2499 Male, age 66, unknown 200.6
2582 Female, age 72, unknown 177.0
2724 Male, age 74, right hemisphere 164.6
2398 Male, age 61, left hemisphere 161.8
1932 Male, age 80, right hemisphere 153.1
2496 Female, age 67, right hemisphere 148.9
1929 Male, age 48, unknown 145.3
2214 Male, age 76, right hemisphere 130.9
1899 Female, age 42, unknown 129.3
1972 Male, age 62, unknown 118.2
Subthalamic nucleus
nTPM: 128.3
2216 Male, age 48, unknown 149.5
2282 Male, age 61, both hemispheres 149.5
2056 Female, age 72, unknown 141.1
2406 Female, age 72, unknown 134.1
2779 Female, age 42, unknown 128.5
2124 Male, age 62, unknown 126.4
2275 Male, age 66, unknown 110.0
2658 Male, age 74, both hemispheres 87.2
Ventral posterolateral thalamic nucleus
nTPM: 174.3
2197 Male, age 80, both hemispheres 220.2
2570 Male, age 75, right hemisphere 206.0
2581 Female, age 72, unknown 177.2
2578 Male, age 74, both hemispheres 167.5
2397 Male, age 61, right hemisphere 148.9
2740 Male, age 76, right hemisphere 126.0
Ventral posteromedial thalamic nucleus
nTPM: 177.4
2758 Male, age 80, both hemispheres 210.5
2127 Male, age 76, right hemisphere 194.3
2281 Male, age 75, right hemisphere 185.7
2653 Male, age 74, both hemispheres 165.4
2202 Male, age 61, left hemisphere 130.9
Ventral thalamic nuclei
nTPM: 162.7
2204 Male, age 80, both hemispheres 220.5
2291 Female, age 72, unknown 185.8
2580 Male, age 66, unknown 178.2
2652 Male, age 74, left hemisphere 171.2
2858 Female, age 72, unknown 170.8
2285 Male, age 62, unknown 161.2
1912 Female, age 42, unknown 135.2
1860 Male, age 76, both hemispheres 134.3
1845 Male, age 48, unknown 107.1
Zona incerta
nTPM: 130.9
2208 Male, age 80, right hemisphere 196.2
2663 Female, age 72, unknown 195.5
2403 Male, age 62, unknown 137.5
2215 Male, age 66, unknown 64.4
2822 Male, age 74, right hemisphere 61.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 131.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 131.5
FF:10154-103A1 76 years, female 131.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 178.1
Pig sample Sample description nTPM
Thalamus
nTPM: 178.1
Samples: 4

Max nTPM: 195.3
Min nTPM: 160.6
Sample A Female 195.3
Sample B Female 161.2
Sample C Male 195.3
Sample D Male 160.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 166.5
Mouse sample Sample description nTPM
Thalamus
nTPM: 166.5
Samples: 4

Max nTPM: 172.4
Min nTPM: 159.3
Sample A Male 163.6
Sample B Male 172.4
Sample C Female 170.8
Sample D Female 159.3

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 2.0
1770 Antisense, RP_040526_02_G02, Mouse strain C57BL/6J (56 days, male) 2.0
1771 Antisense, RP_040526_02_G02, Mouse strain C57BL/6J (56 days, male) 1.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org