BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:29.5 nTPM
HPA Brain:56.5 nTPM
GTEx:29.5 nTPM
FANTOM5:59.7 Scaled Tags Per Million
Pig:21.9 nTPM

CAUDATE - Antibody stainingi
Antibody HPA004144
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.1
1854 Male, age 80, left hemisphere 62.6
1857 Female, age 85, left hemisphere 58.3
2846 Female, age 79, unknown 58.0
2481 Female, age 94, left hemisphere 53.0
2289 Male, age 61, right hemisphere 51.8
2288 Male, age 75, left hemisphere 51.4
2290 Female, age 72, unknown 49.8
1781 Male, age 74, unknown 47.9
Globus pallidus, externus
nTPM: 49.8
2646 Male, age 61, right hemisphere 63.1
2772 Female, age 79, unknown 48.3
1996 Male, age 80, right hemisphere 46.5
2395 Male, age 75, both hemispheres 46.1
2567 Female, age 72, unknown 44.9
Globus pallidus, internus
nTPM: 52.2
2566 Female, age 72, unknown 58.8
2778 Female, age 91, both hemispheres 54.6
2483 Female, age 94, right hemisphere 54.4
1818 Male, age 74, unknown 54.2
2287 Male, age 75, right hemisphere 52.9
2037 Male, age 80, right hemisphere 49.6
2111 Female, age 85, right hemisphere 40.7
Nucleus accumbens
nTPM: 56.5
2391 Female, age 94, left hemisphere 65.6
1783 Male, age 74, unknown 58.9
1856 Female, age 91, right hemisphere 58.8
1806 Female, age 85, left hemisphere 57.2
2698 Female, age 72, unknown 55.3
2732 Male, age 80, right hemisphere 53.7
2286 Male, age 75, left hemisphere 52.8
2824 Male, age 61, right hemisphere 49.8
Nucleus basalis of Meynert
nTPM: 52.7
2821 Male, age 75, both hemispheres 60.8
2569 Male, age 61, both hemispheres 57.8
2393 Male, age 80, right hemisphere 48.2
2484 Female, age 94, left hemisphere 44.0
Nucleus of the diagonal band
nTPM: 53.3
1979 Male, age 74, unknown 65.2
2775 Male, age 80, right hemisphere 55.8
2195 Female, age 85, both hemispheres 54.6
1812 Female, age 91, both hemispheres 49.1
2029 Male, age 61, right hemisphere 41.5
Putamen
nTPM: 53.3
1937 Female, age 91, right hemisphere 60.7
2482 Female, age 94, left hemisphere 57.3
1838 Male, age 80, right hemisphere 52.2
2647 Male, age 75, left hemisphere 52.2
1829 Male, age 74, unknown 51.3
2466 Female, age 79, unknown 51.3
2489 Female, age 72, unknown 48.0
Septal nuclei
nTPM: 50.2
2199 Male, age 80, right hemisphere 57.1
1960 Male, age 74, unknown 53.8
2629 Female, age 94, right hemisphere 52.1
2059 Female, age 85, both hemispheres 50.8
2009 Female, age 91, both hemispheres 49.1
2031 Female, age 72, unknown 45.7
2394 Male, age 61, left hemisphere 43.1
Stria terminalis, bed nucleus
nTPM: 48.4
2201 Male, age 74, unknown 54.7
1974 Female, age 91, both hemispheres 47.3
2486 Female, age 94, both hemispheres 43.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.6
Samples: 246

Max nTPM: 53.9
Min nTPM: 16.7
Std nTPM: 4.7
Median nTPM: 27.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 53.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 48.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 44.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 39.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 38.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 38.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 38.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 36.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 36.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 36.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 35.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.5
Samples: 246

Max nTPM: 43.2
Min nTPM: 17.5
Std nTPM: 5.0
Median nTPM: 29.2
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 43.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 40.7
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 40.5
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 40.4
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 39.4
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 39.3
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 38.6
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 38.5
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 38.2
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 38.2
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 38.1
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Brain - Putamen (basal ganglia)
Average nTPM: 25.1
Samples: 205

Max nTPM: 34.7
Min nTPM: 15.6
Std nTPM: 3.5
Median nTPM: 25.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 34.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 34.1
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 33.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 33.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 33.1
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 33.1
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 32.3
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 32.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 32.2
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 31.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 31.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.6
FF:10164-103B2 76 years, female 59.6
Nucleus accumbens
Scaled Tags Per Million: 59.7
FF:10037-101F1 23-56 years, mixed 59.7
Putamen
Scaled Tags Per Million: 44.8
FF:10176-103C5 60 years, female 44.8
Globus pallidus
Scaled Tags Per Million: 41.7
FF:10175-103C4 60 years, female 43.1
FF:10161-103A8 76 years, female 40.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 21.9
Pig sample Sample description nTPM
Caudate
nTPM: 21.9
Samples: 4

Max nTPM: 24.3
Min nTPM: 20.1
Sample A Female 20.5
Sample B Female 22.7
Sample C Male 24.3
Sample D Male 20.1
Putamen
nTPM: 20.4
Samples: 4

Max nTPM: 23.1
Min nTPM: 18.7
Sample A Female 18.7
Sample B Female 18.8
Sample C Male 23.1
Sample D Male 20.9
Septum
nTPM: 20.7
Samples: 4

Max nTPM: 21.9
Min nTPM: 19.0
Sample A Female 20.7
Sample B Female 21.3
Sample C Male 19.0
Sample D Male 21.9
Ventral pallidum
nTPM: 20.4
Samples: 4

Max nTPM: 22.6
Min nTPM: 18.8
Sample A Female 19.2
Sample B Female 22.6
Sample C Male 18.8
Sample D Male 21.0

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