MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.1 nTPM
HPA Brain:58.1 nTPM
GTEx:23.1 nTPM
FANTOM5:42.0 Scaled Tags Per Million
Pig:22.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.5
2219 Male, age 76, both hemispheres 59.1
2666 Male, age 74, left hemisphere 52.7
1827 Male, age 72, unknown 51.9
1870 Female, age 42, unknown 51.4
1833 Male, age 53, unknown 51.2
1830 Male, age 51, unknown 50.9
2586 Male, age 75, left hemisphere 48.8
2828 Female, age 72, unknown 47.4
2411 Female, age 72, unknown 46.6
2019 Male, age 18, unknown 44.9
Dorsal raphe nucleus
nTPM: 48.8
1828 Male, age 53, unknown 53.7
2016 Female, age 72, unknown 51.8
2298 Female, age 72, unknown 50.4
2047 Male, age 72, unknown 45.9
2750 Male, age 76, both hemispheres 42.3
Inferior colliculus
nTPM: 53.7
2849 Male, age 72, unknown 60.4
1848 Female, age 42, unknown 54.5
2097 Female, age 72, unknown 50.9
1890 Male, age 53, unknown 48.9
Median raphe nucleus
nTPM: 54.6
2220 Male, age 76, midline 54.6
Periaquaductal grey, anterior
nTPM: 51.0
1947 Male, age 18, unknown 54.9
1795 Male, age 51, unknown 51.1
2502 Female, age 75, unknown 47.1
Periaquaductal grey, dorsal
nTPM: 57.0
2850 Male, age 76, both hemispheres 71.0
1831 Male, age 72, unknown 56.8
1840 Male, age 53, unknown 52.6
2464 Female, age 72, unknown 47.7
Periaquaductal grey, lateral
nTPM: 58.1
2140 Male, age 76, both hemispheres 66.4
2272 Male, age 74, both hemispheres 57.5
2053 Male, age 18, unknown 50.2
Pretectal area
nTPM: 54.5
2825 Male, age 18, unknown 58.6
2407 Male, age 75, both hemispheres 57.9
2667 Female, age 75, unknown 56.0
1816 Male, age 51, unknown 55.6
2224 Female, age 72, unknown 55.6
2273 Male, age 74, both hemispheres 55.2
1815 Male, age 53, unknown 55.1
2316 Male, age 76, right hemisphere 55.0
1944 Female, age 72, unknown 52.7
1817 Female, age 42, unknown 51.5
2007 Male, age 72, unknown 46.5
Red nucleus
nTPM: 45.7
2725 Female, age 75, unknown 60.3
1954 Female, age 42, unknown 48.7
2823 Male, age 76, right hemisphere 46.5
1821 Female, age 72, unknown 45.5
1904 Male, age 53, unknown 45.5
2584 Male, age 75, left hemisphere 44.9
2227 Male, age 72, unknown 44.1
1865 Male, age 51, unknown 43.7
2769 Male, age 72, unknown 43.3
2503 Female, age 72, unknown 42.5
2588 Male, age 74, left hemisphere 42.2
2785 Male, age 18, unknown 40.7
Substantia nigra
nTPM: 49.3
2241 Male, age 72, unknown 58.2
2699 Male, age 18, unknown 57.2
1941 Male, age 53, unknown 51.5
1889 Female, age 72, unknown 49.2
2409 Female, age 72, unknown 48.8
1916 Female, age 42, unknown 47.8
2583 Male, age 75, right hemisphere 47.7
1851 Male, age 51, unknown 47.0
2665 Male, age 74, both hemispheres 44.2
2590 Female, age 75, unknown 41.3
Superior colliculus
nTPM: 51.6
1895 Male, age 76, right hemisphere 56.7
2261 Male, age 18, unknown 54.6
1796 Male, age 53, unknown 53.4
2664 Male, age 75, both hemispheres 52.6
2587 Male, age 74, left hemisphere 52.2
1839 Male, age 51, unknown 51.7
1995 Male, age 72, unknown 49.6
2668 Female, age 75, unknown 48.5
1913 Female, age 42, unknown 48.3
2087 Female, age 72, unknown 48.2
Ventral tegmental area
nTPM: 47.5
2218 Male, age 76, both hemispheres 50.3
1942 Male, age 51, unknown 49.5
2410 Female, age 72, unknown 47.8
1915 Female, age 42, unknown 47.7
2021 Male, age 53, unknown 45.0
2223 Female, age 72, unknown 44.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.1
Samples: 139

Max nTPM: 42.0
Min nTPM: 14.4
Std nTPM: 4.3
Median nTPM: 22.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 42.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 37.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 36.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 34.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 33.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 33.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 32.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 30.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 29.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 29.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 29.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.0
FF:10158-103A5 76 years, female 42.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.6
Samples: 4

Max nTPM: 22.5
Min nTPM: 19.1
Sample A Female 22.5
Sample B Female 19.9
Sample C Male 19.1
Sample D Male 20.8
Midbrain
nTPM: 22.1
Samples: 4

Max nTPM: 27.4
Min nTPM: 18.8
Sample A Female 27.4
Sample B Female 18.8
Sample C Male 21.2
Sample D Male 21.1
Periaqueductal gray
nTPM: 20.3
Samples: 3

Max nTPM: 21.2
Min nTPM: 19.3
Sample B Female 20.3
Sample C Male 21.2
Sample D Male 19.3
Superior colliculi
nTPM: 21.6
Samples: 4

Max nTPM: 22.0
Min nTPM: 20.4
Sample A Female 21.9
Sample B Female 21.9
Sample C Male 20.4
Sample D Male 22.0

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