MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.7 nTPM
HPA Brain:42.5 nTPM
GTEx:16.7 nTPM
FANTOM5:42.7 Scaled Tags Per Million
Pig:29.2 nTPM
Mouse:18.6 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.0
1870 Female, age 42, unknown 42.9
1833 Male, age 53, unknown 42.8
1830 Male, age 51, unknown 42.5
2219 Male, age 76, both hemispheres 40.6
2411 Female, age 72, unknown 38.6
2666 Male, age 74, left hemisphere 37.3
2019 Male, age 18, unknown 37.0
2828 Female, age 72, unknown 34.4
1827 Male, age 72, unknown 32.8
2586 Male, age 75, left hemisphere 31.4
Dorsal raphe nucleus
nTPM: 33.1
2750 Male, age 76, both hemispheres 40.0
2016 Female, age 72, unknown 37.2
1828 Male, age 53, unknown 31.5
2298 Female, age 72, unknown 28.7
2047 Male, age 72, unknown 28.3
Inferior colliculus
nTPM: 34.8
1848 Female, age 42, unknown 35.8
1890 Male, age 53, unknown 35.4
2849 Male, age 72, unknown 34.8
2097 Female, age 72, unknown 33.0
Median raphe nucleus
nTPM: 31.3
2220 Male, age 76, midline 31.3
Periaquaductal grey, anterior
nTPM: 31.5
2502 Female, age 75, unknown 35.1
1947 Male, age 18, unknown 32.3
1795 Male, age 51, unknown 27.2
Periaquaductal grey, dorsal
nTPM: 32.8
2464 Female, age 72, unknown 34.7
1831 Male, age 72, unknown 32.9
2850 Male, age 76, both hemispheres 32.6
1840 Male, age 53, unknown 31.0
Periaquaductal grey, lateral
nTPM: 30.1
2053 Male, age 18, unknown 32.4
2140 Male, age 76, both hemispheres 29.0
2272 Male, age 74, both hemispheres 28.8
Pretectal area
nTPM: 32.4
1815 Male, age 53, unknown 38.4
2316 Male, age 76, right hemisphere 35.8
1817 Female, age 42, unknown 34.0
2007 Male, age 72, unknown 32.8
1944 Female, age 72, unknown 32.3
2825 Male, age 18, unknown 31.6
2224 Female, age 72, unknown 31.5
2407 Male, age 75, both hemispheres 31.1
1816 Male, age 51, unknown 30.9
2273 Male, age 74, both hemispheres 29.2
2667 Female, age 75, unknown 28.5
Red nucleus
nTPM: 42.5
1865 Male, age 51, unknown 48.1
1904 Male, age 53, unknown 47.3
1954 Female, age 42, unknown 46.5
1821 Female, age 72, unknown 45.1
2503 Female, age 72, unknown 44.8
2823 Male, age 76, right hemisphere 44.0
2769 Male, age 72, unknown 43.0
2227 Male, age 72, unknown 42.8
2785 Male, age 18, unknown 39.9
2588 Male, age 74, left hemisphere 37.5
2725 Female, age 75, unknown 37.4
2584 Male, age 75, left hemisphere 33.0
Substantia nigra
nTPM: 34.4
2409 Female, age 72, unknown 37.8
2699 Male, age 18, unknown 37.2
2241 Male, age 72, unknown 36.8
2590 Female, age 75, unknown 35.5
2665 Male, age 74, both hemispheres 35.3
1889 Female, age 72, unknown 35.0
1851 Male, age 51, unknown 33.6
2583 Male, age 75, right hemisphere 32.9
1941 Male, age 53, unknown 30.0
1916 Female, age 42, unknown 29.5
Superior colliculus
nTPM: 36.4
1913 Female, age 42, unknown 45.1
1995 Male, age 72, unknown 42.5
2668 Female, age 75, unknown 39.9
2587 Male, age 74, left hemisphere 37.7
1895 Male, age 76, right hemisphere 37.1
1839 Male, age 51, unknown 36.9
2261 Male, age 18, unknown 33.2
2087 Female, age 72, unknown 31.7
1796 Male, age 53, unknown 30.2
2664 Male, age 75, both hemispheres 30.1
Ventral tegmental area
nTPM: 34.4
2223 Female, age 72, unknown 38.7
2410 Female, age 72, unknown 37.0
2218 Male, age 76, both hemispheres 33.8
2021 Male, age 53, unknown 33.4
1942 Male, age 51, unknown 32.1
1915 Female, age 42, unknown 31.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.7
Samples: 139

Max nTPM: 33.0
Min nTPM: 7.0
Std nTPM: 5.4
Median nTPM: 16.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 33.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 32.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 32.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 30.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 28.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 27.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 27.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 27.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 26.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 26.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 25.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.7
FF:10158-103A5 76 years, female 42.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.3
Samples: 4

Max nTPM: 33.1
Min nTPM: 25.2
Sample A Female 25.7
Sample B Female 25.3
Sample C Male 25.2
Sample D Male 33.1
Midbrain
nTPM: 29.2
Samples: 4

Max nTPM: 37.8
Min nTPM: 24.3
Sample A Female 37.8
Sample B Female 29.4
Sample C Male 24.3
Sample D Male 25.4
Periaqueductal gray
nTPM: 25.9
Samples: 3

Max nTPM: 27.3
Min nTPM: 23.6
Sample B Female 27.3
Sample C Male 23.6
Sample D Male 26.7
Superior colliculi
nTPM: 24.3
Samples: 4

Max nTPM: 25.4
Min nTPM: 21.9
Sample A Female 24.8
Sample B Female 21.9
Sample C Male 25.4
Sample D Male 25.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.6
Samples: 4

Max nTPM: 19.3
Min nTPM: 17.1
Sample A Male 17.1
Sample B Male 19.3
Sample C Female 19.1
Sample D Female 19.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
71735062 Antisense, RP_050512_03_B03, Mouse strain C57BL/6J (56 days, male) 3.6
71212488 Antisense, RP_050816_03_D02, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org