MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.8 nTPM
HPA Brain:18.8 nTPM
GTEx:3.8 nTPM
FANTOM5:30.0 Scaled Tags Per Million
Pig:4.6 nTPM
Mouse:0.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.2
2586 Male, age 75, left hemisphere 21.2
2828 Female, age 72, unknown 17.8
2666 Male, age 74, left hemisphere 17.2
1833 Male, age 53, unknown 16.9
1830 Male, age 51, unknown 15.8
2411 Female, age 72, unknown 14.9
1870 Female, age 42, unknown 13.3
1827 Male, age 72, unknown 13.0
2019 Male, age 18, unknown 12.2
2219 Male, age 76, both hemispheres 10.2
Dorsal raphe nucleus
nTPM: 16.8
2016 Female, age 72, unknown 19.9
2298 Female, age 72, unknown 17.7
1828 Male, age 53, unknown 15.7
2047 Male, age 72, unknown 15.7
2750 Male, age 76, both hemispheres 15.0
Inferior colliculus
nTPM: 13.8
2849 Male, age 72, unknown 14.8
1890 Male, age 53, unknown 14.1
1848 Female, age 42, unknown 13.5
2097 Female, age 72, unknown 12.6
Median raphe nucleus
nTPM: 14.6
2220 Male, age 76, midline 14.6
Periaquaductal grey, anterior
nTPM: 16.5
1795 Male, age 51, unknown 20.7
1947 Male, age 18, unknown 15.2
2502 Female, age 75, unknown 13.5
Periaquaductal grey, dorsal
nTPM: 16.0
1831 Male, age 72, unknown 16.4
2850 Male, age 76, both hemispheres 16.2
2464 Female, age 72, unknown 15.9
1840 Male, age 53, unknown 15.4
Periaquaductal grey, lateral
nTPM: 18.3
2140 Male, age 76, both hemispheres 18.6
2272 Male, age 74, both hemispheres 18.4
2053 Male, age 18, unknown 18.0
Pretectal area
nTPM: 15.2
2316 Male, age 76, right hemisphere 21.1
2224 Female, age 72, unknown 19.9
2407 Male, age 75, both hemispheres 19.8
2825 Male, age 18, unknown 16.7
2273 Male, age 74, both hemispheres 14.6
1817 Female, age 42, unknown 13.5
1944 Female, age 72, unknown 13.0
2667 Female, age 75, unknown 12.9
1815 Male, age 53, unknown 12.2
2007 Male, age 72, unknown 11.8
1816 Male, age 51, unknown 11.7
Red nucleus
nTPM: 15.3
2584 Male, age 75, left hemisphere 22.2
1865 Male, age 51, unknown 16.7
2227 Male, age 72, unknown 16.6
2725 Female, age 75, unknown 16.6
2769 Male, age 72, unknown 16.2
1954 Female, age 42, unknown 14.8
2503 Female, age 72, unknown 14.6
2823 Male, age 76, right hemisphere 14.5
1904 Male, age 53, unknown 14.2
2785 Male, age 18, unknown 13.0
1821 Female, age 72, unknown 12.5
2588 Male, age 74, left hemisphere 12.2
Substantia nigra
nTPM: 18.8
2699 Male, age 18, unknown 27.8
2583 Male, age 75, right hemisphere 23.2
2665 Male, age 74, both hemispheres 23.0
2590 Female, age 75, unknown 22.4
2241 Male, age 72, unknown 18.9
1851 Male, age 51, unknown 16.0
1941 Male, age 53, unknown 16.0
1916 Female, age 42, unknown 15.8
2409 Female, age 72, unknown 12.8
1889 Female, age 72, unknown 12.4
Superior colliculus
nTPM: 15.3
2664 Male, age 75, both hemispheres 22.7
1995 Male, age 72, unknown 17.0
1913 Female, age 42, unknown 16.0
2587 Male, age 74, left hemisphere 15.6
1796 Male, age 53, unknown 15.4
1839 Male, age 51, unknown 15.2
2668 Female, age 75, unknown 15.2
2087 Female, age 72, unknown 14.4
2261 Male, age 18, unknown 13.5
1895 Male, age 76, right hemisphere 7.8
Ventral tegmental area
nTPM: 17.1
2021 Male, age 53, unknown 22.9
1915 Female, age 42, unknown 19.1
2218 Male, age 76, both hemispheres 16.4
1942 Male, age 51, unknown 16.1
2223 Female, age 72, unknown 14.1
2410 Female, age 72, unknown 13.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.8
Samples: 139

Max nTPM: 11.2
Min nTPM: 0.9
Std nTPM: 1.7
Median nTPM: 3.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 11.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 8.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 8.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 7.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 7.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 7.3
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 6.9
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 6.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 6.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 6.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 6.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.0
FF:10158-103A5 76 years, female 30.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.6
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.8
Sample A Female 4.1
Sample B Female 5.8
Sample C Male 3.8
Sample D Male 4.8
Midbrain
nTPM: 3.4
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.4
Sample A Female 4.2
Sample B Female 4.2
Sample C Male 2.6
Sample D Male 2.4
Periaqueductal gray
nTPM: 3.2
Samples: 3

Max nTPM: 3.7
Min nTPM: 2.7
Sample B Female 3.7
Sample C Male 3.1
Sample D Male 2.7
Superior colliculi
nTPM: 3.9
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.3
Sample A Female 4.4
Sample B Female 4.0
Sample C Male 3.3
Sample D Male 4.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.8
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.7
Sample A Male 0.7
Sample B Male 0.8
Sample C Female 0.9
Sample D Female 0.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71735064 Antisense, RP_050607_03_A06, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org