HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:59.6 nTPM
HPA Brain:79.7 nTPM
GTEx:59.6 nTPM
FANTOM5:218.8 Scaled Tags Per Million
Pig:113.9 nTPM
Mouse:119.8 nTPM
Allen mouse:3.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA002567
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 79.7
Sample id Sample description nTPM
Hippocampus
nTPM: 71.7
1898 Male, age 80, left hemisphere 86.9
2529 Female, age 94, left hemisphere 77.0
1855 Male, age 76, left hemisphere 73.3
1911 Female, age 85, right hemisphere 66.9
2621 Female, age 67, right hemisphere 65.6
2148 Female, age 91, left hemisphere 60.3
Dentate gyrus
nTPM: 71.8
2530 Female, age 94, left hemisphere 81.5
2010 Male, age 76, both hemispheres 76.4
1927 Female, age 91, both hemispheres 74.7
2246 Female, age 85, both hemispheres 72.7
2528 Male, age 74, both hemispheres 71.4
2531 Female, age 67, both hemispheres 54.3
Entorhinal gyrus
nTPM: 64.8
1938 Female, age 85, left hemisphere 82.5
2117 Female, age 91, right hemisphere 71.1
1787 Male, age 76, left hemisphere 71.0
2764 Male, age 80, right hemisphere 67.4
2613 Female, age 94, left hemisphere 49.3
2686 Male, age 75, right hemisphere 47.2
Hippocampus, CA1
nTPM: 76.8
2749 Male, age 80, left hemisphere 92.1
1873 Female, age 85, both hemispheres 79.5
2527 Male, age 74, both hemispheres 79.1
2045 Male, age 76, both hemispheres 67.8
2082 Female, age 91, right hemisphere 65.5
Hippocampus, CA2
nTPM: 73.6
2249 Male, age 74, both hemispheres 92.4
1963 Male, age 80, left hemisphere 74.7
1892 Male, age 76, both hemispheres 69.8
2113 Female, age 91, right hemisphere 69.0
2437 Female, age 94, left hemisphere 68.7
1940 Female, age 85, left hemisphere 66.8
Hippocampus, CA3
nTPM: 65.3
2436 Male, age 74, both hemispheres 84.6
2137 Male, age 80, left hemisphere 78.8
1891 Female, age 85, both hemispheres 70.1
1867 Male, age 76, both hemispheres 67.5
2620 Female, age 94, left hemisphere 46.9
2861 Female, age 67, both hemispheres 43.7
Parahippocampal cortex
nTPM: 69.2
2250 Female, age 67, right hemisphere 86.1
1933 Female, age 85, both hemispheres 79.6
2245 Female, age 91, both hemispheres 76.3
1850 Male, age 80, both hemispheres 73.9
1990 Female, age 91, right hemisphere 73.2
2018 Male, age 76, both hemispheres 72.0
2532 Female, age 72, left hemisphere 67.9
2692 Male, age 74, both hemispheres 60.5
2693 Female, age 94, both hemispheres 57.5
2622 Female, age 67, right hemisphere 45.0
Perirhinal gyrus
nTPM: 79.7
2521 Female, age 94, right hemisphere 84.6
1841 Female, age 85, right hemisphere 84.0
1847 Female, age 91, left hemisphere 79.5
1794 Male, age 80, right hemisphere 78.1
2848 Male, age 76, right hemisphere 72.3
Subiculum
nTPM: 70.2
1977 Female, age 85, both hemispheres 80.8
1901 Male, age 80, both hemispheres 71.9
2438 Female, age 94, left hemisphere 71.8
2729 Female, age 91, right hemisphere 69.8
2042 Male, age 76, both hemispheres 67.6
2619 Male, age 74, both hemispheres 59.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 59.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 59.6
Samples: 197

Max nTPM: 121.2
Min nTPM: 33.1
Std nTPM: 12.4
Median nTPM: 59.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 121.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 106.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 89.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 88.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 85.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 82.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 80.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 77.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 77.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 77.6
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 77.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 218.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 218.8
FF:10169-103B7 60 years, female 309.4
FF:10153-102I9 76 years, female 128.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 113.9
Pig sample Sample description nTPM
Subiculum
nTPM: 91.1
Samples: 4

Max nTPM: 123.7
Min nTPM: 76.5
Sample A Female 123.7
Sample B Female 83.5
Sample C Male 76.5
Sample D Male 80.6
Dorsal hippocampus
nTPM: 113.9
Samples: 4

Max nTPM: 153.5
Min nTPM: 80.9
Sample A Female 153.5
Sample B Female 110.8
Sample C Male 110.4
Sample D Male 80.9
Entorhinal cortex
nTPM: 88.6
Samples: 4

Max nTPM: 101.4
Min nTPM: 68.6
Sample A Female 85.2
Sample B Female 101.4
Sample C Male 99.3
Sample D Male 68.6
Ventral hippocampus
nTPM: 103.8
Samples: 4

Max nTPM: 117.9
Min nTPM: 82.7
Sample A Female 117.9
Sample B Female 82.7
Sample C Male 104.0
Sample D Male 110.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 119.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 110.0
Samples: 4

Max nTPM: 123.2
Min nTPM: 102.0
Sample A Male 109.7
Sample B Male 102.0
Sample C Female 123.2
Sample D Female 105.0
Hippocampal formation
nTPM: 119.8
Samples: 4

Max nTPM: 144.9
Min nTPM: 103.5
Sample A Male 144.9
Sample B Male 119.3
Sample C Female 111.6
Sample D Female 103.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.2
79544842 Antisense, RP_071101_01_A05, Mouse strain C57BL/6J (56 days, male) 3.2

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