MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.9 nTPM
HPA Brain:85.6 nTPM
GTEx:57.9 nTPM
FANTOM5:140.9 Scaled Tags Per Million
Pig:144.2 nTPM
Mouse:104.6 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 85.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.3
1870 Female, age 42, unknown 76.2
1833 Male, age 53, unknown 74.9
2411 Female, age 72, unknown 73.5
1827 Male, age 72, unknown 69.8
2219 Male, age 76, both hemispheres 66.1
2019 Male, age 18, unknown 66.0
1830 Male, age 51, unknown 65.2
2828 Female, age 72, unknown 61.9
2666 Male, age 74, left hemisphere 50.5
2586 Male, age 75, left hemisphere 38.5
Dorsal raphe nucleus
nTPM: 76.6
2298 Female, age 72, unknown 91.0
2750 Male, age 76, both hemispheres 78.1
2016 Female, age 72, unknown 75.0
1828 Male, age 53, unknown 73.2
2047 Male, age 72, unknown 65.7
Inferior colliculus
nTPM: 71.5
2097 Female, age 72, unknown 82.0
2849 Male, age 72, unknown 69.7
1848 Female, age 42, unknown 68.0
1890 Male, age 53, unknown 66.5
Median raphe nucleus
nTPM: 84.1
2220 Male, age 76, midline 84.1
Periaquaductal grey, anterior
nTPM: 68.6
1947 Male, age 18, unknown 75.6
1795 Male, age 51, unknown 65.9
2502 Female, age 75, unknown 64.2
Periaquaductal grey, dorsal
nTPM: 77.6
2850 Male, age 76, both hemispheres 93.5
1840 Male, age 53, unknown 77.0
2464 Female, age 72, unknown 71.4
1831 Male, age 72, unknown 68.3
Periaquaductal grey, lateral
nTPM: 85.6
2272 Male, age 74, both hemispheres 98.4
2140 Male, age 76, both hemispheres 86.1
2053 Male, age 18, unknown 72.3
Pretectal area
nTPM: 76.4
2273 Male, age 74, both hemispheres 99.5
2224 Female, age 72, unknown 90.9
1817 Female, age 42, unknown 79.9
1816 Male, age 51, unknown 78.3
2667 Female, age 75, unknown 77.3
1944 Female, age 72, unknown 75.2
1815 Male, age 53, unknown 75.0
2316 Male, age 76, right hemisphere 71.1
2825 Male, age 18, unknown 71.1
2007 Male, age 72, unknown 66.7
2407 Male, age 75, both hemispheres 55.6
Red nucleus
nTPM: 66.9
1821 Female, age 72, unknown 78.9
1954 Female, age 42, unknown 76.9
2227 Male, age 72, unknown 73.5
2503 Female, age 72, unknown 73.2
1904 Male, age 53, unknown 71.6
2725 Female, age 75, unknown 71.2
2823 Male, age 76, right hemisphere 71.0
2769 Male, age 72, unknown 64.8
1865 Male, age 51, unknown 64.2
2785 Male, age 18, unknown 60.6
2584 Male, age 75, left hemisphere 51.1
2588 Male, age 74, left hemisphere 46.3
Substantia nigra
nTPM: 68.8
2241 Male, age 72, unknown 88.2
1889 Female, age 72, unknown 75.9
1916 Female, age 42, unknown 75.0
1941 Male, age 53, unknown 71.7
1851 Male, age 51, unknown 69.8
2409 Female, age 72, unknown 68.0
2699 Male, age 18, unknown 68.0
2590 Female, age 75, unknown 66.3
2665 Male, age 74, both hemispheres 55.0
2583 Male, age 75, right hemisphere 50.6
Superior colliculus
nTPM: 69.2
2261 Male, age 18, unknown 81.4
2587 Male, age 74, left hemisphere 76.4
1913 Female, age 42, unknown 72.6
2087 Female, age 72, unknown 72.2
1895 Male, age 76, right hemisphere 68.7
2668 Female, age 75, unknown 68.5
1839 Male, age 51, unknown 68.0
1995 Male, age 72, unknown 67.0
1796 Male, age 53, unknown 65.0
2664 Male, age 75, both hemispheres 51.9
Ventral tegmental area
nTPM: 73.7
2218 Male, age 76, both hemispheres 82.5
2223 Female, age 72, unknown 76.8
2410 Female, age 72, unknown 73.7
1942 Male, age 51, unknown 72.5
1915 Female, age 42, unknown 72.0
2021 Male, age 53, unknown 64.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.9
Samples: 139

Max nTPM: 94.5
Min nTPM: 30.7
Std nTPM: 9.7
Median nTPM: 56.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 94.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 81.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 81.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 79.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 76.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 75.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 75.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 74.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 73.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 73.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 73.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 140.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 140.9
FF:10158-103A5 76 years, female 140.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 144.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 137.6
Samples: 4

Max nTPM: 189.3
Min nTPM: 115.5
Sample A Female 189.3
Sample B Female 121.9
Sample C Male 123.8
Sample D Male 115.5
Midbrain
nTPM: 136.7
Samples: 4

Max nTPM: 191.5
Min nTPM: 103.1
Sample A Female 191.5
Sample B Female 135.8
Sample C Male 103.1
Sample D Male 116.4
Periaqueductal gray
nTPM: 117.1
Samples: 3

Max nTPM: 127.5
Min nTPM: 110.4
Sample B Female 113.3
Sample C Male 127.5
Sample D Male 110.4
Superior colliculi
nTPM: 144.2
Samples: 4

Max nTPM: 174.3
Min nTPM: 132.6
Sample A Female 174.3
Sample B Female 132.6
Sample C Male 135.2
Sample D Male 134.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.6
Samples: 4

Max nTPM: 117.6
Min nTPM: 95.9
Sample A Male 117.6
Sample B Male 97.9
Sample C Female 95.9
Sample D Female 106.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
79544842 Antisense, RP_071101_01_A05, Mouse strain C57BL/6J (56 days, male) 1.7

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