MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.0 nTPM
HPA Brain:14.7 nTPM
GTEx:6.0 nTPM
FANTOM5:6.9 Scaled Tags Per Million
Pig:1.6 nTPM
Mouse:0.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.7
2828 Female, age 72, unknown 12.8
2586 Male, age 75, left hemisphere 10.8
1833 Male, age 53, unknown 9.1
1830 Male, age 51, unknown 9.0
1827 Male, age 72, unknown 8.7
1870 Female, age 42, unknown 8.4
2411 Female, age 72, unknown 7.9
2219 Male, age 76, both hemispheres 7.8
2019 Male, age 18, unknown 7.0
2666 Male, age 74, left hemisphere 5.2
Dorsal raphe nucleus
nTPM: 9.8
2016 Female, age 72, unknown 13.2
2298 Female, age 72, unknown 10.4
2047 Male, age 72, unknown 8.9
1828 Male, age 53, unknown 8.5
2750 Male, age 76, both hemispheres 8.3
Inferior colliculus
nTPM: 9.1
2849 Male, age 72, unknown 11.9
1848 Female, age 42, unknown 10.4
1890 Male, age 53, unknown 7.7
2097 Female, age 72, unknown 6.5
Median raphe nucleus
nTPM: 7.2
2220 Male, age 76, midline 7.2
Periaquaductal grey, anterior
nTPM: 10.1
1795 Male, age 51, unknown 10.9
1947 Male, age 18, unknown 9.8
2502 Female, age 75, unknown 9.6
Periaquaductal grey, dorsal
nTPM: 12.4
1840 Male, age 53, unknown 14.8
2850 Male, age 76, both hemispheres 12.8
2464 Female, age 72, unknown 11.1
1831 Male, age 72, unknown 11.0
Periaquaductal grey, lateral
nTPM: 14.7
2140 Male, age 76, both hemispheres 19.6
2053 Male, age 18, unknown 12.7
2272 Male, age 74, both hemispheres 11.9
Pretectal area
nTPM: 10.1
2316 Male, age 76, right hemisphere 13.7
2667 Female, age 75, unknown 13.0
2273 Male, age 74, both hemispheres 12.7
2224 Female, age 72, unknown 12.3
2825 Male, age 18, unknown 9.8
1815 Male, age 53, unknown 9.5
1944 Female, age 72, unknown 9.1
1816 Male, age 51, unknown 8.3
2407 Male, age 75, both hemispheres 8.0
1817 Female, age 42, unknown 7.5
2007 Male, age 72, unknown 7.2
Red nucleus
nTPM: 8.9
2227 Male, age 72, unknown 10.7
1954 Female, age 42, unknown 10.1
2823 Male, age 76, right hemisphere 10.1
2769 Male, age 72, unknown 10.0
2503 Female, age 72, unknown 9.8
1821 Female, age 72, unknown 9.2
1904 Male, age 53, unknown 9.0
2588 Male, age 74, left hemisphere 9.0
1865 Male, age 51, unknown 8.9
2725 Female, age 75, unknown 8.6
2785 Male, age 18, unknown 7.1
2584 Male, age 75, left hemisphere 3.6
Substantia nigra
nTPM: 10.7
2699 Male, age 18, unknown 15.1
1916 Female, age 42, unknown 13.8
2590 Female, age 75, unknown 12.8
2409 Female, age 72, unknown 11.2
1851 Male, age 51, unknown 10.9
2665 Male, age 74, both hemispheres 10.7
2583 Male, age 75, right hemisphere 10.3
2241 Male, age 72, unknown 9.0
1889 Female, age 72, unknown 7.1
1941 Male, age 53, unknown 6.3
Superior colliculus
nTPM: 10.0
1796 Male, age 53, unknown 12.9
2087 Female, age 72, unknown 12.4
2261 Male, age 18, unknown 11.5
2664 Male, age 75, both hemispheres 10.9
1839 Male, age 51, unknown 10.7
1913 Female, age 42, unknown 9.8
1995 Male, age 72, unknown 9.5
1895 Male, age 76, right hemisphere 9.3
2587 Male, age 74, left hemisphere 7.1
2668 Female, age 75, unknown 6.3
Ventral tegmental area
nTPM: 9.5
2021 Male, age 53, unknown 11.9
1915 Female, age 42, unknown 11.4
2410 Female, age 72, unknown 9.0
2218 Male, age 76, both hemispheres 8.4
1942 Male, age 51, unknown 8.3
2223 Female, age 72, unknown 8.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.0
Samples: 139

Max nTPM: 35.1
Min nTPM: 0.4
Std nTPM: 5.2
Median nTPM: 4.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 35.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 27.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 24.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 22.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 18.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 17.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 14.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 14.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 14.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 14.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 14.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.9
FF:10158-103A5 76 years, female 6.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 1.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.4
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.9
Sample A Female 0.9
Sample B Female 1.8
Sample C Male 1.1
Sample D Male 1.7
Midbrain
nTPM: 1.3
Samples: 4

Max nTPM: 1.5
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 1.4
Sample C Male 1.2
Sample D Male 1.5
Periaqueductal gray
nTPM: 1.6
Samples: 3

Max nTPM: 2.1
Min nTPM: 1.3
Sample B Female 1.5
Sample C Male 1.3
Sample D Male 2.1
Superior colliculi
nTPM: 1.2
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.8
Sample A Female 0.8
Sample B Female 1.5
Sample C Male 1.2
Sample D Male 1.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.2
Sample A Male 0.4
Sample B Male 0.4
Sample C Female 0.2
Sample D Female 0.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73423911 Antisense, RP_051019_03_B07, Mouse strain C57BL/6J (56 days, male) 0.0

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