MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.9 nTPM
HPA Brain:22.0 nTPM
GTEx:10.9 nTPM
FANTOM5:57.6 Scaled Tags Per Million
Pig:21.3 nTPM
Mouse:14.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.3
2019 Male, age 18, unknown 23.8
1833 Male, age 53, unknown 21.8
2411 Female, age 72, unknown 21.3
2219 Male, age 76, both hemispheres 19.8
2666 Male, age 74, left hemisphere 18.9
1830 Male, age 51, unknown 18.5
2828 Female, age 72, unknown 18.2
2586 Male, age 75, left hemisphere 17.4
1827 Male, age 72, unknown 16.6
1870 Female, age 42, unknown 16.5
Dorsal raphe nucleus
nTPM: 18.4
2016 Female, age 72, unknown 20.4
2047 Male, age 72, unknown 18.7
1828 Male, age 53, unknown 18.2
2750 Male, age 76, both hemispheres 18.0
2298 Female, age 72, unknown 16.7
Inferior colliculus
nTPM: 20.3
1848 Female, age 42, unknown 21.4
1890 Male, age 53, unknown 20.3
2849 Male, age 72, unknown 20.0
2097 Female, age 72, unknown 19.3
Median raphe nucleus
nTPM: 15.4
2220 Male, age 76, midline 15.4
Periaquaductal grey, anterior
nTPM: 20.9
1947 Male, age 18, unknown 24.5
2502 Female, age 75, unknown 20.6
1795 Male, age 51, unknown 17.7
Periaquaductal grey, dorsal
nTPM: 20.3
1840 Male, age 53, unknown 25.1
2850 Male, age 76, both hemispheres 19.3
2464 Female, age 72, unknown 19.2
1831 Male, age 72, unknown 17.8
Periaquaductal grey, lateral
nTPM: 20.6
2140 Male, age 76, both hemispheres 22.0
2272 Male, age 74, both hemispheres 21.2
2053 Male, age 18, unknown 18.7
Pretectal area
nTPM: 18.7
2407 Male, age 75, both hemispheres 23.5
2007 Male, age 72, unknown 20.7
1817 Female, age 42, unknown 20.3
1944 Female, age 72, unknown 20.3
2667 Female, age 75, unknown 19.8
2224 Female, age 72, unknown 19.7
2316 Male, age 76, right hemisphere 17.6
2825 Male, age 18, unknown 17.3
2273 Male, age 74, both hemispheres 17.1
1816 Male, age 51, unknown 15.9
1815 Male, age 53, unknown 13.8
Red nucleus
nTPM: 22.0
2785 Male, age 18, unknown 27.3
1865 Male, age 51, unknown 26.3
2227 Male, age 72, unknown 24.6
2584 Male, age 75, left hemisphere 24.2
1904 Male, age 53, unknown 23.5
1954 Female, age 42, unknown 23.0
2503 Female, age 72, unknown 21.6
2769 Male, age 72, unknown 20.6
2823 Male, age 76, right hemisphere 19.3
2588 Male, age 74, left hemisphere 19.0
2725 Female, age 75, unknown 17.7
1821 Female, age 72, unknown 17.3
Substantia nigra
nTPM: 20.2
2409 Female, age 72, unknown 31.8
2583 Male, age 75, right hemisphere 21.7
2665 Male, age 74, both hemispheres 21.3
2241 Male, age 72, unknown 20.4
2590 Female, age 75, unknown 19.8
1941 Male, age 53, unknown 19.4
1851 Male, age 51, unknown 18.4
1889 Female, age 72, unknown 18.3
1916 Female, age 42, unknown 17.0
2699 Male, age 18, unknown 14.1
Superior colliculus
nTPM: 20.4
1839 Male, age 51, unknown 25.2
2668 Female, age 75, unknown 23.6
1895 Male, age 76, right hemisphere 22.6
1995 Male, age 72, unknown 21.5
1913 Female, age 42, unknown 19.5
2664 Male, age 75, both hemispheres 19.5
2087 Female, age 72, unknown 18.8
2261 Male, age 18, unknown 18.2
1796 Male, age 53, unknown 18.1
2587 Male, age 74, left hemisphere 17.4
Ventral tegmental area
nTPM: 19.7
2410 Female, age 72, unknown 24.0
2223 Female, age 72, unknown 20.6
1942 Male, age 51, unknown 19.9
2021 Male, age 53, unknown 19.6
1915 Female, age 42, unknown 18.1
2218 Male, age 76, both hemispheres 15.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.9
Samples: 139

Max nTPM: 18.7
Min nTPM: 6.4
Std nTPM: 2.3
Median nTPM: 10.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 18.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 17.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 16.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 16.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 16.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 15.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 14.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 14.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 14.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 14.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 14.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.6
FF:10158-103A5 76 years, female 57.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.8
Samples: 4

Max nTPM: 23.8
Min nTPM: 18.3
Sample A Female 20.5
Sample B Female 20.7
Sample C Male 18.3
Sample D Male 23.8
Midbrain
nTPM: 21.3
Samples: 4

Max nTPM: 23.7
Min nTPM: 19.5
Sample A Female 23.7
Sample B Female 20.7
Sample C Male 19.5
Sample D Male 21.2
Periaqueductal gray
nTPM: 20.2
Samples: 3

Max nTPM: 21.0
Min nTPM: 19.3
Sample B Female 20.2
Sample C Male 19.3
Sample D Male 21.0
Superior colliculi
nTPM: 21.3
Samples: 4

Max nTPM: 21.7
Min nTPM: 20.0
Sample A Female 21.7
Sample B Female 21.6
Sample C Male 20.0
Sample D Male 21.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.9
Samples: 4

Max nTPM: 15.7
Min nTPM: 13.7
Sample A Male 15.7
Sample B Male 15.4
Sample C Female 14.8
Sample D Female 13.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69134298 Antisense, RP_050321_02_F12, Mouse strain C57BL/6J (56 days, male) 0.4

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