HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:41.7 nTPM
HPA Brain:12.7 nTPM
GTEx:41.7 nTPM
FANTOM5:37.7 Scaled Tags Per Million
Pig:22.6 nTPM
Mouse:27.1 nTPM
Allen mouse:7.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA000904Antibody HPA068782
Glial cells LowLow
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 12.7
Sample id Sample description nTPM
Hippocampus
nTPM: 10.7
1898 Male, age 80, left hemisphere 15.8
2529 Female, age 94, left hemisphere 11.6
1911 Female, age 85, right hemisphere 10.4
2148 Female, age 91, left hemisphere 9.2
1855 Male, age 76, left hemisphere 9.0
2621 Female, age 67, right hemisphere 8.2
Dentate gyrus
nTPM: 11.1
2528 Male, age 74, both hemispheres 15.7
1927 Female, age 91, both hemispheres 11.1
2530 Female, age 94, left hemisphere 10.3
2010 Male, age 76, both hemispheres 10.2
2246 Female, age 85, both hemispheres 9.9
2531 Female, age 67, both hemispheres 9.5
Entorhinal gyrus
nTPM: 11.1
2764 Male, age 80, right hemisphere 12.8
2117 Female, age 91, right hemisphere 11.9
1938 Female, age 85, left hemisphere 11.4
2686 Male, age 75, right hemisphere 11.0
2613 Female, age 94, left hemisphere 10.8
1787 Male, age 76, left hemisphere 9.0
Hippocampus, CA1
nTPM: 12.0
2749 Male, age 80, left hemisphere 16.8
2527 Male, age 74, both hemispheres 13.3
2082 Female, age 91, right hemisphere 10.9
2045 Male, age 76, both hemispheres 10.0
1873 Female, age 85, both hemispheres 9.0
Hippocampus, CA2
nTPM: 12.7
1963 Male, age 80, left hemisphere 14.4
2437 Female, age 94, left hemisphere 14.4
1892 Male, age 76, both hemispheres 13.0
1940 Female, age 85, left hemisphere 12.0
2249 Male, age 74, both hemispheres 11.5
2113 Female, age 91, right hemisphere 11.1
Hippocampus, CA3
nTPM: 12.7
2436 Male, age 74, both hemispheres 15.6
1867 Male, age 76, both hemispheres 13.0
2137 Male, age 80, left hemisphere 12.7
2620 Female, age 94, left hemisphere 12.2
1891 Female, age 85, both hemispheres 11.4
2861 Female, age 67, both hemispheres 11.4
Parahippocampal cortex
nTPM: 11.0
2693 Female, age 94, both hemispheres 12.8
2245 Female, age 91, both hemispheres 11.9
1990 Female, age 91, right hemisphere 11.7
2018 Male, age 76, both hemispheres 11.6
2692 Male, age 74, both hemispheres 11.0
2250 Female, age 67, right hemisphere 10.8
1850 Male, age 80, both hemispheres 10.7
1933 Female, age 85, both hemispheres 9.9
2622 Female, age 67, right hemisphere 9.8
2532 Female, age 72, left hemisphere 9.4
Perirhinal gyrus
nTPM: 11.9
1847 Female, age 91, left hemisphere 17.1
1841 Female, age 85, right hemisphere 12.0
1794 Male, age 80, right hemisphere 11.6
2848 Male, age 76, right hemisphere 9.9
2521 Female, age 94, right hemisphere 8.6
Subiculum
nTPM: 12.2
2438 Female, age 94, left hemisphere 18.8
1977 Female, age 85, both hemispheres 12.6
2619 Male, age 74, both hemispheres 11.1
2729 Female, age 91, right hemisphere 10.5
1901 Male, age 80, both hemispheres 10.4
2042 Male, age 76, both hemispheres 10.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 41.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 41.7
Samples: 197

Max nTPM: 65.6
Min nTPM: 23.0
Std nTPM: 6.2
Median nTPM: 41.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 65.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 61.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 59.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 58.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 58.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 57.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 54.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 54.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 53.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 53.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 53.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 37.7
FF:10169-103B7 60 years, female 45.6
FF:10153-102I9 76 years, female 29.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 22.6
Pig sample Sample description nTPM
Subiculum
nTPM: 21.8
Samples: 4

Max nTPM: 22.8
Min nTPM: 20.5
Sample A Female 22.0
Sample B Female 22.8
Sample C Male 21.8
Sample D Male 20.5
Dorsal hippocampus
nTPM: 21.8
Samples: 4

Max nTPM: 22.7
Min nTPM: 21.0
Sample A Female 21.0
Sample B Female 21.5
Sample C Male 22.1
Sample D Male 22.7
Entorhinal cortex
nTPM: 21.4
Samples: 4

Max nTPM: 24.2
Min nTPM: 19.8
Sample A Female 19.8
Sample B Female 24.2
Sample C Male 20.0
Sample D Male 21.4
Ventral hippocampus
nTPM: 22.6
Samples: 4

Max nTPM: 24.6
Min nTPM: 20.5
Sample A Female 20.5
Sample B Female 21.0
Sample C Male 24.3
Sample D Male 24.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 27.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 22.7
Samples: 4

Max nTPM: 23.7
Min nTPM: 22.0
Sample A Male 22.6
Sample B Male 22.5
Sample C Female 23.7
Sample D Female 22.0
Hippocampal formation
nTPM: 27.2
Samples: 4

Max nTPM: 31.7
Min nTPM: 24.9
Sample A Male 31.7
Sample B Male 25.5
Sample C Female 24.9
Sample D Female 26.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.4
100144758 Antisense, RP_110421_03_E05, Mouse strain C57BL/6J (56 days, male) 7.4

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