MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.8 nTPM
HPA Brain:15.5 nTPM
GTEx:46.8 nTPM
FANTOM5:43.3 Scaled Tags Per Million
Pig:27.1 nTPM
Mouse:27.7 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.2
2411 Female, age 72, unknown 17.0
2666 Male, age 74, left hemisphere 15.9
1833 Male, age 53, unknown 15.1
2019 Male, age 18, unknown 14.8
1827 Male, age 72, unknown 14.4
2828 Female, age 72, unknown 14.3
1830 Male, age 51, unknown 14.0
1870 Female, age 42, unknown 13.2
2586 Male, age 75, left hemisphere 12.6
2219 Male, age 76, both hemispheres 10.7
Dorsal raphe nucleus
nTPM: 13.4
2047 Male, age 72, unknown 15.5
2298 Female, age 72, unknown 13.5
1828 Male, age 53, unknown 13.4
2750 Male, age 76, both hemispheres 12.5
2016 Female, age 72, unknown 12.3
Inferior colliculus
nTPM: 12.9
2097 Female, age 72, unknown 14.4
1848 Female, age 42, unknown 13.3
1890 Male, age 53, unknown 12.5
2849 Male, age 72, unknown 11.3
Median raphe nucleus
nTPM: 12.3
2220 Male, age 76, midline 12.3
Periaquaductal grey, anterior
nTPM: 13.3
1947 Male, age 18, unknown 14.5
2502 Female, age 75, unknown 14.0
1795 Male, age 51, unknown 11.5
Periaquaductal grey, dorsal
nTPM: 12.8
2850 Male, age 76, both hemispheres 14.6
1840 Male, age 53, unknown 13.6
1831 Male, age 72, unknown 12.4
2464 Female, age 72, unknown 10.8
Periaquaductal grey, lateral
nTPM: 11.7
2272 Male, age 74, both hemispheres 13.3
2053 Male, age 18, unknown 12.5
2140 Male, age 76, both hemispheres 9.3
Pretectal area
nTPM: 14.3
2273 Male, age 74, both hemispheres 18.0
2007 Male, age 72, unknown 17.7
1816 Male, age 51, unknown 16.4
1944 Female, age 72, unknown 16.2
1815 Male, age 53, unknown 16.0
1817 Female, age 42, unknown 14.4
2825 Male, age 18, unknown 13.1
2316 Male, age 76, right hemisphere 12.0
2667 Female, age 75, unknown 12.0
2407 Male, age 75, both hemispheres 11.3
2224 Female, age 72, unknown 10.8
Red nucleus
nTPM: 13.0
2725 Female, age 75, unknown 15.7
1954 Female, age 42, unknown 15.0
2588 Male, age 74, left hemisphere 15.0
2769 Male, age 72, unknown 14.5
1821 Female, age 72, unknown 13.1
2823 Male, age 76, right hemisphere 13.1
2503 Female, age 72, unknown 13.0
2584 Male, age 75, left hemisphere 12.6
1865 Male, age 51, unknown 12.2
2785 Male, age 18, unknown 12.2
1904 Male, age 53, unknown 10.9
2227 Male, age 72, unknown 8.9
Substantia nigra
nTPM: 15.5
1851 Male, age 51, unknown 18.4
2409 Female, age 72, unknown 18.1
1916 Female, age 42, unknown 16.8
1889 Female, age 72, unknown 15.9
1941 Male, age 53, unknown 15.9
2241 Male, age 72, unknown 15.9
2665 Male, age 74, both hemispheres 15.4
2590 Female, age 75, unknown 13.1
2699 Male, age 18, unknown 13.1
2583 Male, age 75, right hemisphere 12.0
Superior colliculus
nTPM: 12.7
2087 Female, age 72, unknown 15.4
1895 Male, age 76, right hemisphere 14.3
2261 Male, age 18, unknown 13.7
2668 Female, age 75, unknown 13.6
1796 Male, age 53, unknown 12.7
2664 Male, age 75, both hemispheres 12.3
1995 Male, age 72, unknown 12.2
1913 Female, age 42, unknown 11.2
2587 Male, age 74, left hemisphere 11.2
1839 Male, age 51, unknown 10.6
Ventral tegmental area
nTPM: 12.2
2410 Female, age 72, unknown 15.0
1915 Female, age 42, unknown 13.8
1942 Male, age 51, unknown 12.7
2021 Male, age 53, unknown 10.9
2218 Male, age 76, both hemispheres 10.4
2223 Female, age 72, unknown 10.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.8
Samples: 139

Max nTPM: 92.5
Min nTPM: 32.0
Std nTPM: 8.2
Median nTPM: 46.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 92.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 72.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 71.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 66.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 64.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 64.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 62.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 61.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 60.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 59.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 58.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.3
FF:10158-103A5 76 years, female 43.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.4
Samples: 4

Max nTPM: 28.1
Min nTPM: 20.6
Sample A Female 25.1
Sample B Female 20.6
Sample C Male 28.1
Sample D Male 23.7
Midbrain
nTPM: 26.0
Samples: 4

Max nTPM: 28.4
Min nTPM: 23.2
Sample A Female 23.2
Sample B Female 25.1
Sample C Male 27.4
Sample D Male 28.4
Periaqueductal gray
nTPM: 23.6
Samples: 3

Max nTPM: 24.0
Min nTPM: 23.1
Sample B Female 23.7
Sample C Male 24.0
Sample D Male 23.1
Superior colliculi
nTPM: 27.1
Samples: 4

Max nTPM: 30.8
Min nTPM: 24.9
Sample A Female 24.9
Sample B Female 26.3
Sample C Male 30.8
Sample D Male 26.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.7
Samples: 4

Max nTPM: 28.9
Min nTPM: 25.8
Sample A Male 28.9
Sample B Male 25.8
Sample C Female 28.3
Sample D Female 27.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
100144758 Antisense, RP_110421_03_E05, Mouse strain C57BL/6J (56 days, male) 3.3

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