MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:76.9 nTPM
HPA Brain:138.9 nTPM
GTEx:76.9 nTPM
FANTOM5:98.9 Scaled Tags Per Million
Pig:147.7 nTPM
Mouse:143.7 nTPM
Allen mouse:9.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 138.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 124.1
2586 Male, age 75, left hemisphere 164.1
2828 Female, age 72, unknown 143.8
1827 Male, age 72, unknown 138.8
2411 Female, age 72, unknown 132.2
2666 Male, age 74, left hemisphere 126.7
1870 Female, age 42, unknown 111.7
2019 Male, age 18, unknown 109.5
1833 Male, age 53, unknown 107.3
2219 Male, age 76, both hemispheres 105.1
1830 Male, age 51, unknown 102.2
Dorsal raphe nucleus
nTPM: 138.9
2298 Female, age 72, unknown 152.1
2047 Male, age 72, unknown 151.9
1828 Male, age 53, unknown 148.7
2016 Female, age 72, unknown 128.9
2750 Male, age 76, both hemispheres 113.0
Inferior colliculus
nTPM: 113.4
1848 Female, age 42, unknown 119.7
2849 Male, age 72, unknown 116.5
2097 Female, age 72, unknown 111.3
1890 Male, age 53, unknown 106.0
Median raphe nucleus
nTPM: 104.5
2220 Male, age 76, midline 104.5
Periaquaductal grey, anterior
nTPM: 130.1
1795 Male, age 51, unknown 140.3
1947 Male, age 18, unknown 126.9
2502 Female, age 75, unknown 123.3
Periaquaductal grey, dorsal
nTPM: 117.5
1840 Male, age 53, unknown 140.1
2464 Female, age 72, unknown 121.4
2850 Male, age 76, both hemispheres 104.3
1831 Male, age 72, unknown 104.1
Periaquaductal grey, lateral
nTPM: 109.6
2053 Male, age 18, unknown 117.2
2140 Male, age 76, both hemispheres 110.6
2272 Male, age 74, both hemispheres 100.9
Pretectal area
nTPM: 119.5
1944 Female, age 72, unknown 135.3
2667 Female, age 75, unknown 135.3
2224 Female, age 72, unknown 126.0
1816 Male, age 51, unknown 123.5
2007 Male, age 72, unknown 120.5
2407 Male, age 75, both hemispheres 118.9
2825 Male, age 18, unknown 118.2
1817 Female, age 42, unknown 117.0
2273 Male, age 74, both hemispheres 115.2
1815 Male, age 53, unknown 105.8
2316 Male, age 76, right hemisphere 98.6
Red nucleus
nTPM: 103.3
2584 Male, age 75, left hemisphere 129.8
2503 Female, age 72, unknown 107.4
2588 Male, age 74, left hemisphere 107.4
2785 Male, age 18, unknown 107.0
2769 Male, age 72, unknown 105.3
2227 Male, age 72, unknown 105.1
2725 Female, age 75, unknown 103.5
1821 Female, age 72, unknown 103.1
1954 Female, age 42, unknown 102.8
1865 Male, age 51, unknown 92.2
2823 Male, age 76, right hemisphere 91.7
1904 Male, age 53, unknown 84.7
Substantia nigra
nTPM: 124.8
1916 Female, age 42, unknown 142.3
1941 Male, age 53, unknown 134.7
1851 Male, age 51, unknown 132.1
2583 Male, age 75, right hemisphere 130.1
2590 Female, age 75, unknown 124.3
2665 Male, age 74, both hemispheres 121.7
1889 Female, age 72, unknown 119.1
2699 Male, age 18, unknown 117.1
2241 Male, age 72, unknown 116.8
2409 Female, age 72, unknown 109.8
Superior colliculus
nTPM: 116.6
2664 Male, age 75, both hemispheres 160.5
1796 Male, age 53, unknown 137.2
2261 Male, age 18, unknown 126.9
2087 Female, age 72, unknown 121.9
1839 Male, age 51, unknown 113.9
2668 Female, age 75, unknown 106.1
1913 Female, age 42, unknown 105.8
1995 Male, age 72, unknown 101.0
2587 Male, age 74, left hemisphere 100.5
1895 Male, age 76, right hemisphere 92.4
Ventral tegmental area
nTPM: 123.3
1942 Male, age 51, unknown 139.7
1915 Female, age 42, unknown 129.7
2410 Female, age 72, unknown 125.3
2021 Male, age 53, unknown 122.4
2223 Female, age 72, unknown 114.6
2218 Male, age 76, both hemispheres 107.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.9
Samples: 139

Max nTPM: 310.0
Min nTPM: 28.9
Std nTPM: 44.4
Median nTPM: 66.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 310.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 305.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 286.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 237.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 214.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 174.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 165.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 148.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 122.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 114.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 109.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.9
FF:10158-103A5 76 years, female 98.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 147.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 117.3
Samples: 4

Max nTPM: 157.4
Min nTPM: 82.6
Sample A Female 157.4
Sample B Female 100.3
Sample C Male 129.0
Sample D Male 82.6
Midbrain
nTPM: 118.5
Samples: 4

Max nTPM: 135.2
Min nTPM: 93.4
Sample A Female 116.3
Sample B Female 93.4
Sample C Male 129.1
Sample D Male 135.2
Periaqueductal gray
nTPM: 101.5
Samples: 3

Max nTPM: 115.0
Min nTPM: 90.7
Sample B Female 98.8
Sample C Male 115.0
Sample D Male 90.7
Superior colliculi
nTPM: 147.7
Samples: 4

Max nTPM: 177.9
Min nTPM: 106.3
Sample A Female 177.9
Sample B Female 106.3
Sample C Male 168.1
Sample D Male 138.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 143.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 143.7
Samples: 4

Max nTPM: 149.2
Min nTPM: 138.6
Sample A Male 149.2
Sample B Male 142.2
Sample C Female 138.6
Sample D Female 144.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.0
227737 Antisense, RP_040609_01_C07, Mouse strain C57BL/6J (56 days, male) 9.0
276075 Antisense, RP_040609_01_C07, Mouse strain C57BL/6J (56 days, male) 8.7

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