MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.1 nTPM
HPA Brain:97.1 nTPM
GTEx:16.1 nTPM
FANTOM5:99.8 Scaled Tags Per Million
Pig:30.0 nTPM
Mouse:22.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.5
1830 Male, age 51, unknown 109.9
1833 Male, age 53, unknown 97.1
2019 Male, age 18, unknown 95.8
1827 Male, age 72, unknown 91.8
2666 Male, age 74, left hemisphere 89.6
2411 Female, age 72, unknown 89.1
2219 Male, age 76, both hemispheres 88.2
2828 Female, age 72, unknown 84.8
1870 Female, age 42, unknown 81.7
2586 Male, age 75, left hemisphere 77.4
Dorsal raphe nucleus
nTPM: 83.3
2750 Male, age 76, both hemispheres 87.1
2047 Male, age 72, unknown 86.1
2298 Female, age 72, unknown 83.8
1828 Male, age 53, unknown 81.2
2016 Female, age 72, unknown 78.1
Inferior colliculus
nTPM: 85.8
1848 Female, age 42, unknown 95.3
2849 Male, age 72, unknown 92.5
1890 Male, age 53, unknown 80.2
2097 Female, age 72, unknown 75.3
Median raphe nucleus
nTPM: 97.1
2220 Male, age 76, midline 97.1
Periaquaductal grey, anterior
nTPM: 79.6
1947 Male, age 18, unknown 97.0
2502 Female, age 75, unknown 74.3
1795 Male, age 51, unknown 67.4
Periaquaductal grey, dorsal
nTPM: 76.4
2464 Female, age 72, unknown 84.2
2850 Male, age 76, both hemispheres 79.6
1831 Male, age 72, unknown 72.9
1840 Male, age 53, unknown 69.0
Periaquaductal grey, lateral
nTPM: 85.4
2140 Male, age 76, both hemispheres 91.2
2272 Male, age 74, both hemispheres 90.9
2053 Male, age 18, unknown 74.0
Pretectal area
nTPM: 82.9
1817 Female, age 42, unknown 99.3
1944 Female, age 72, unknown 93.9
2007 Male, age 72, unknown 91.3
2667 Female, age 75, unknown 89.5
1816 Male, age 51, unknown 83.5
2825 Male, age 18, unknown 82.7
2407 Male, age 75, both hemispheres 81.9
1815 Male, age 53, unknown 79.0
2273 Male, age 74, both hemispheres 75.8
2316 Male, age 76, right hemisphere 68.5
2224 Female, age 72, unknown 66.2
Red nucleus
nTPM: 89.4
1954 Female, age 42, unknown 107.9
2588 Male, age 74, left hemisphere 107.7
1904 Male, age 53, unknown 103.7
2785 Male, age 18, unknown 94.8
1865 Male, age 51, unknown 88.7
2725 Female, age 75, unknown 86.9
2503 Female, age 72, unknown 85.1
2823 Male, age 76, right hemisphere 82.5
1821 Female, age 72, unknown 80.8
2227 Male, age 72, unknown 80.6
2584 Male, age 75, left hemisphere 79.9
2769 Male, age 72, unknown 74.3
Substantia nigra
nTPM: 95.1
2241 Male, age 72, unknown 124.1
2409 Female, age 72, unknown 105.4
1941 Male, age 53, unknown 97.6
2665 Male, age 74, both hemispheres 97.2
1889 Female, age 72, unknown 96.1
2590 Female, age 75, unknown 95.2
1916 Female, age 42, unknown 88.8
2583 Male, age 75, right hemisphere 87.9
1851 Male, age 51, unknown 82.2
2699 Male, age 18, unknown 76.5
Superior colliculus
nTPM: 80.4
1895 Male, age 76, right hemisphere 99.3
2087 Female, age 72, unknown 83.9
1839 Male, age 51, unknown 83.7
2587 Male, age 74, left hemisphere 82.5
2261 Male, age 18, unknown 80.5
2668 Female, age 75, unknown 78.8
1796 Male, age 53, unknown 77.7
1913 Female, age 42, unknown 76.6
2664 Male, age 75, both hemispheres 74.9
1995 Male, age 72, unknown 66.0
Ventral tegmental area
nTPM: 79.9
2410 Female, age 72, unknown 85.1
1942 Male, age 51, unknown 82.6
2218 Male, age 76, both hemispheres 82.2
2021 Male, age 53, unknown 79.1
1915 Female, age 42, unknown 75.9
2223 Female, age 72, unknown 74.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.1
Samples: 139

Max nTPM: 34.0
Min nTPM: 6.9
Std nTPM: 4.5
Median nTPM: 15.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 34.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 32.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 31.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 28.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 28.3
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 26.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 25.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 25.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 25.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 24.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 24.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 99.8
FF:10158-103A5 76 years, female 99.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.5
Samples: 4

Max nTPM: 34.7
Min nTPM: 25.4
Sample A Female 25.4
Sample B Female 26.6
Sample C Male 34.7
Sample D Male 31.3
Midbrain
nTPM: 30.0
Samples: 4

Max nTPM: 32.6
Min nTPM: 26.9
Sample A Female 29.0
Sample B Female 26.9
Sample C Male 31.6
Sample D Male 32.6
Periaqueductal gray
nTPM: 28.0
Samples: 3

Max nTPM: 31.0
Min nTPM: 26.2
Sample B Female 26.2
Sample C Male 31.0
Sample D Male 26.8
Superior colliculi
nTPM: 28.1
Samples: 4

Max nTPM: 32.1
Min nTPM: 25.5
Sample A Female 26.4
Sample B Female 25.5
Sample C Male 28.3
Sample D Male 32.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.7
Samples: 4

Max nTPM: 24.0
Min nTPM: 21.1
Sample A Male 21.1
Sample B Male 22.2
Sample C Female 24.0
Sample D Female 23.5

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