HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.0 nTPM
HPA Brain:46.3 nTPM
GTEx:10.0 nTPM
FANTOM5:17.6 Scaled Tags Per Million
Pig:44.5 nTPM
Mouse:33.4 nTPM
Allen mouse:3.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 46.3
Sample id Sample description nTPM
Hippocampus
nTPM: 15.3
2529 Female, age 94, left hemisphere 24.4
1911 Female, age 85, right hemisphere 21.3
2621 Female, age 67, right hemisphere 18.6
2148 Female, age 91, left hemisphere 12.6
1898 Male, age 80, left hemisphere 8.5
1855 Male, age 76, left hemisphere 6.6
Dentate gyrus
nTPM: 9.9
2246 Female, age 85, both hemispheres 18.5
1927 Female, age 91, both hemispheres 17.0
2531 Female, age 67, both hemispheres 8.6
2528 Male, age 74, both hemispheres 6.6
2010 Male, age 76, both hemispheres 6.0
2530 Female, age 94, left hemisphere 2.6
Entorhinal gyrus
nTPM: 46.3
2613 Female, age 94, left hemisphere 72.4
2686 Male, age 75, right hemisphere 48.4
1787 Male, age 76, left hemisphere 46.2
1938 Female, age 85, left hemisphere 42.3
2764 Male, age 80, right hemisphere 39.1
2117 Female, age 91, right hemisphere 29.4
Hippocampus, CA1
nTPM: 16.1
2082 Female, age 91, right hemisphere 27.2
2527 Male, age 74, both hemispheres 18.4
2749 Male, age 80, left hemisphere 16.7
1873 Female, age 85, both hemispheres 9.4
2045 Male, age 76, both hemispheres 8.7
Hippocampus, CA2
nTPM: 15.9
2113 Female, age 91, right hemisphere 34.5
2249 Male, age 74, both hemispheres 16.6
2437 Female, age 94, left hemisphere 13.6
1940 Female, age 85, left hemisphere 12.5
1892 Male, age 76, both hemispheres 11.9
1963 Male, age 80, left hemisphere 6.2
Hippocampus, CA3
nTPM: 15.6
2436 Male, age 74, both hemispheres 27.7
2137 Male, age 80, left hemisphere 25.8
1891 Female, age 85, both hemispheres 13.8
1867 Male, age 76, both hemispheres 11.7
2861 Female, age 67, both hemispheres 8.8
2620 Female, age 94, left hemisphere 5.7
Parahippocampal cortex
nTPM: 35.3
2245 Female, age 91, both hemispheres 51.0
1990 Female, age 91, right hemisphere 44.2
2692 Male, age 74, both hemispheres 39.8
2622 Female, age 67, right hemisphere 38.7
1933 Female, age 85, both hemispheres 37.6
2250 Female, age 67, right hemisphere 34.9
2693 Female, age 94, both hemispheres 32.5
1850 Male, age 80, both hemispheres 28.9
2018 Male, age 76, both hemispheres 23.1
2532 Female, age 72, left hemisphere 22.1
Perirhinal gyrus
nTPM: 36.3
1847 Female, age 91, left hemisphere 56.8
2521 Female, age 94, right hemisphere 35.0
2848 Male, age 76, right hemisphere 34.9
1794 Male, age 80, right hemisphere 31.0
1841 Female, age 85, right hemisphere 23.8
Subiculum
nTPM: 22.0
2619 Male, age 74, both hemispheres 30.3
1977 Female, age 85, both hemispheres 24.3
2438 Female, age 94, left hemisphere 22.9
2042 Male, age 76, both hemispheres 22.0
1901 Male, age 80, both hemispheres 20.6
2729 Female, age 91, right hemisphere 12.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.0
Samples: 197

Max nTPM: 47.5
Min nTPM: 0.1
Std nTPM: 8.4
Median nTPM: 7.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 47.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 45.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 37.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 34.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 31.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 29.5
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 28.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 28.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 27.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 26.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 24.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 17.6
FF:10153-102I9 76 years, female 23.9
FF:10169-103B7 60 years, female 11.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 44.5
Pig sample Sample description nTPM
Subiculum
nTPM: 44.5
Samples: 4

Max nTPM: 49.1
Min nTPM: 38.3
Sample A Female 45.1
Sample B Female 45.6
Sample C Male 49.1
Sample D Male 38.3
Dorsal hippocampus
nTPM: 6.8
Samples: 4

Max nTPM: 12.3
Min nTPM: 2.4
Sample A Female 4.8
Sample B Female 7.5
Sample C Male 12.3
Sample D Male 2.4
Entorhinal cortex
nTPM: 24.6
Samples: 4

Max nTPM: 33.3
Min nTPM: 18.5
Sample A Female 21.8
Sample B Female 24.6
Sample C Male 33.3
Sample D Male 18.5
Ventral hippocampus
nTPM: 13.9
Samples: 4

Max nTPM: 22.5
Min nTPM: 9.6
Sample A Female 9.6
Sample B Female 13.4
Sample C Male 22.5
Sample D Male 10.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 33.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 33.4
Samples: 4

Max nTPM: 40.1
Min nTPM: 28.1
Sample A Male 35.4
Sample B Male 30.0
Sample C Female 28.1
Sample D Female 40.1
Hippocampal formation
nTPM: 17.5
Samples: 4

Max nTPM: 20.0
Min nTPM: 11.1
Sample A Male 20.0
Sample B Male 19.9
Sample C Female 11.1
Sample D Female 19.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.5
71393412 Antisense, RP_050825_02_B04, Mouse strain C57BL/6J (56 days, male) 3.5
73636034 Antisense, RP_050825_02_B04, Mouse strain C57BL/6J (56 days, male) 1.7

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