HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:52.5 nTPM
HPA Brain:56.3 nTPM
GTEx:52.5 nTPM
FANTOM5:27.9 Scaled Tags Per Million
Pig:4.2 nTPM
Mouse:66.8 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA029876
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 56.3
Sample id Sample description nTPM
Hippocampus
nTPM: 56.3
2529 Female, age 94, left hemisphere 81.4
2148 Female, age 91, left hemisphere 63.7
1855 Male, age 76, left hemisphere 54.6
1898 Male, age 80, left hemisphere 47.4
1911 Female, age 85, right hemisphere 46.4
2621 Female, age 67, right hemisphere 44.4
Dentate gyrus
nTPM: 41.2
2528 Male, age 74, both hemispheres 56.4
2530 Female, age 94, left hemisphere 43.7
2246 Female, age 85, both hemispheres 38.6
1927 Female, age 91, both hemispheres 38.5
2010 Male, age 76, both hemispheres 36.4
2531 Female, age 67, both hemispheres 33.8
Entorhinal gyrus
nTPM: 43.5
2117 Female, age 91, right hemisphere 71.2
2686 Male, age 75, right hemisphere 43.6
1938 Female, age 85, left hemisphere 40.0
2613 Female, age 94, left hemisphere 38.7
2764 Male, age 80, right hemisphere 37.7
1787 Male, age 76, left hemisphere 29.7
Hippocampus, CA1
nTPM: 43.1
2527 Male, age 74, both hemispheres 61.2
1873 Female, age 85, both hemispheres 44.4
2082 Female, age 91, right hemisphere 41.3
2045 Male, age 76, both hemispheres 38.5
2749 Male, age 80, left hemisphere 29.8
Hippocampus, CA2
nTPM: 37.9
2113 Female, age 91, right hemisphere 52.2
2437 Female, age 94, left hemisphere 45.4
2249 Male, age 74, both hemispheres 42.3
1963 Male, age 80, left hemisphere 39.8
1940 Female, age 85, left hemisphere 25.2
1892 Male, age 76, both hemispheres 22.7
Hippocampus, CA3
nTPM: 39.2
2620 Female, age 94, left hemisphere 45.0
1891 Female, age 85, both hemispheres 44.4
2436 Male, age 74, both hemispheres 42.0
2861 Female, age 67, both hemispheres 41.1
1867 Male, age 76, both hemispheres 32.4
2137 Male, age 80, left hemisphere 30.5
Parahippocampal cortex
nTPM: 38.2
2250 Female, age 67, right hemisphere 58.3
2692 Male, age 74, both hemispheres 50.5
1990 Female, age 91, right hemisphere 42.7
2622 Female, age 67, right hemisphere 42.6
2245 Female, age 91, both hemispheres 40.5
1933 Female, age 85, both hemispheres 40.4
2018 Male, age 76, both hemispheres 33.7
1850 Male, age 80, both hemispheres 31.2
2693 Female, age 94, both hemispheres 22.8
2532 Female, age 72, left hemisphere 19.1
Perirhinal gyrus
nTPM: 31.5
1847 Female, age 91, left hemisphere 49.4
1841 Female, age 85, right hemisphere 31.0
1794 Male, age 80, right hemisphere 30.1
2521 Female, age 94, right hemisphere 27.1
2848 Male, age 76, right hemisphere 19.7
Subiculum
nTPM: 45.5
2729 Female, age 91, right hemisphere 74.9
2619 Male, age 74, both hemispheres 49.9
2042 Male, age 76, both hemispheres 41.4
2438 Female, age 94, left hemisphere 40.5
1977 Female, age 85, both hemispheres 34.3
1901 Male, age 80, both hemispheres 32.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 52.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 52.5
Samples: 197

Max nTPM: 123.6
Min nTPM: 7.1
Std nTPM: 25.1
Median nTPM: 49.8
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 123.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 122.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 116.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 115.4
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 113.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 112.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 112.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 110.9
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 106.9
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 106.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 106.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.9
FF:10169-103B7 60 years, female 33.2
FF:10153-102I9 76 years, female 22.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 4.2
Pig sample Sample description nTPM
Subiculum
nTPM: 4.2
Samples: 4

Max nTPM: 6.2
Min nTPM: 2.1
Sample A Female 6.2
Sample B Female 3.6
Sample C Male 2.1
Sample D Male 4.7
Dorsal hippocampus
nTPM: 1.9
Samples: 4

Max nTPM: 5.3
Min nTPM: 0.6
Sample A Female 0.8
Sample B Female 0.9
Sample C Male 5.3
Sample D Male 0.6
Entorhinal cortex
nTPM: 2.7
Samples: 4

Max nTPM: 5.5
Min nTPM: 1.5
Sample A Female 2.0
Sample B Female 1.6
Sample C Male 5.5
Sample D Male 1.5
Ventral hippocampus
nTPM: 1.1
Samples: 4

Max nTPM: 2.3
Min nTPM: 0.2
Sample A Female 0.7
Sample B Female 1.0
Sample C Male 2.3
Sample D Male 0.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 66.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 66.8
Samples: 4

Max nTPM: 74.5
Min nTPM: 63.6
Sample A Male 64.6
Sample B Male 64.4
Sample C Female 74.5
Sample D Female 63.6
Hippocampal formation
nTPM: 66.3
Samples: 4

Max nTPM: 72.4
Min nTPM: 59.0
Sample A Male 71.1
Sample B Male 62.8
Sample C Female 59.0
Sample D Female 72.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
112648182 Antisense, RP_080912_05_A07, Mouse strain C57BL/6J (56 days, male) 0.6
1475 Antisense, RP_Baylor_103226, Mouse strain C57BL/6J (56 days, male) 0.1

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