MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.6 nTPM
HPA Brain:60.3 nTPM
GTEx:22.6 nTPM
FANTOM5:52.0 Scaled Tags Per Million
Mouse:57.5 nTPM
Allen mouse:7.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.3
2019 Male, age 18, unknown 66.5
2666 Male, age 74, left hemisphere 55.5
1827 Male, age 72, unknown 55.0
2411 Female, age 72, unknown 54.5
1870 Female, age 42, unknown 53.1
2586 Male, age 75, left hemisphere 50.1
1833 Male, age 53, unknown 49.9
1830 Male, age 51, unknown 49.8
2219 Male, age 76, both hemispheres 49.8
2828 Female, age 72, unknown 49.1
Dorsal raphe nucleus
nTPM: 53.4
2047 Male, age 72, unknown 56.8
1828 Male, age 53, unknown 54.7
2750 Male, age 76, both hemispheres 54.1
2298 Female, age 72, unknown 53.1
2016 Female, age 72, unknown 48.1
Inferior colliculus
nTPM: 49.5
2097 Female, age 72, unknown 53.5
1890 Male, age 53, unknown 50.2
1848 Female, age 42, unknown 48.4
2849 Male, age 72, unknown 45.9
Median raphe nucleus
nTPM: 52.6
2220 Male, age 76, midline 52.6
Periaquaductal grey, anterior
nTPM: 52.6
1947 Male, age 18, unknown 53.1
1795 Male, age 51, unknown 52.4
2502 Female, age 75, unknown 52.2
Periaquaductal grey, dorsal
nTPM: 52.1
2850 Male, age 76, both hemispheres 56.5
1831 Male, age 72, unknown 52.7
1840 Male, age 53, unknown 50.2
2464 Female, age 72, unknown 48.8
Periaquaductal grey, lateral
nTPM: 50.7
2272 Male, age 74, both hemispheres 53.5
2053 Male, age 18, unknown 51.6
2140 Male, age 76, both hemispheres 47.1
Pretectal area
nTPM: 60.3
1816 Male, age 51, unknown 70.9
1817 Female, age 42, unknown 70.5
2007 Male, age 72, unknown 67.8
1944 Female, age 72, unknown 67.3
1815 Male, age 53, unknown 65.2
2407 Male, age 75, both hemispheres 59.9
2667 Female, age 75, unknown 58.1
2273 Male, age 74, both hemispheres 53.3
2224 Female, age 72, unknown 50.6
2825 Male, age 18, unknown 50.0
2316 Male, age 76, right hemisphere 49.3
Red nucleus
nTPM: 54.2
1821 Female, age 72, unknown 59.8
1865 Male, age 51, unknown 58.0
1904 Male, age 53, unknown 57.1
2725 Female, age 75, unknown 56.9
2584 Male, age 75, left hemisphere 55.9
2823 Male, age 76, right hemisphere 54.9
2785 Male, age 18, unknown 54.0
2588 Male, age 74, left hemisphere 53.9
1954 Female, age 42, unknown 53.4
2503 Female, age 72, unknown 51.2
2227 Male, age 72, unknown 47.7
2769 Male, age 72, unknown 47.5
Substantia nigra
nTPM: 59.8
1889 Female, age 72, unknown 70.3
2241 Male, age 72, unknown 68.8
1916 Female, age 42, unknown 65.6
1941 Male, age 53, unknown 63.5
1851 Male, age 51, unknown 62.1
2699 Male, age 18, unknown 57.1
2583 Male, age 75, right hemisphere 56.0
2665 Male, age 74, both hemispheres 53.6
2590 Female, age 75, unknown 51.7
2409 Female, age 72, unknown 49.8
Superior colliculus
nTPM: 54.2
2668 Female, age 75, unknown 61.1
2087 Female, age 72, unknown 57.9
1895 Male, age 76, right hemisphere 57.5
1913 Female, age 42, unknown 57.4
2664 Male, age 75, both hemispheres 53.5
2587 Male, age 74, left hemisphere 52.3
2261 Male, age 18, unknown 52.2
1796 Male, age 53, unknown 51.9
1995 Male, age 72, unknown 51.0
1839 Male, age 51, unknown 46.9
Ventral tegmental area
nTPM: 55.9
2218 Male, age 76, both hemispheres 64.4
2410 Female, age 72, unknown 61.2
1915 Female, age 42, unknown 54.4
2223 Female, age 72, unknown 54.2
1942 Male, age 51, unknown 51.7
2021 Male, age 53, unknown 49.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.6
Samples: 139

Max nTPM: 32.1
Min nTPM: 15.6
Std nTPM: 3.0
Median nTPM: 22.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 32.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 32.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 29.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 29.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 29.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 28.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 28.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 28.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 28.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 28.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 27.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.0
FF:10158-103A5 76 years, female 52.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.5
Samples: 4

Max nTPM: 62.8
Min nTPM: 52.7
Sample A Male 52.7
Sample B Male 58.3
Sample C Female 62.8
Sample D Female 56.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.3
68546488 Antisense, RP_050120_02_E12, Mouse strain C57BL/6J (56 days, male) 7.3

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