MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.9 nTPM
HPA Brain:30.6 nTPM
GTEx:16.9 nTPM
FANTOM5:92.1 Scaled Tags Per Million
Pig:20.4 nTPM
Mouse:9.8 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.7
1870 Female, age 42, unknown 24.3
2019 Male, age 18, unknown 24.2
2666 Male, age 74, left hemisphere 23.4
1827 Male, age 72, unknown 22.2
1830 Male, age 51, unknown 22.2
1833 Male, age 53, unknown 21.6
2411 Female, age 72, unknown 21.6
2828 Female, age 72, unknown 21.5
2219 Male, age 76, both hemispheres 21.3
2586 Male, age 75, left hemisphere 15.0
Dorsal raphe nucleus
nTPM: 22.9
2750 Male, age 76, both hemispheres 24.7
2016 Female, age 72, unknown 24.2
1828 Male, age 53, unknown 23.3
2298 Female, age 72, unknown 22.5
2047 Male, age 72, unknown 19.9
Inferior colliculus
nTPM: 21.1
1848 Female, age 42, unknown 22.6
1890 Male, age 53, unknown 21.7
2097 Female, age 72, unknown 21.1
2849 Male, age 72, unknown 19.0
Median raphe nucleus
nTPM: 18.2
2220 Male, age 76, midline 18.2
Periaquaductal grey, anterior
nTPM: 23.3
2502 Female, age 75, unknown 24.2
1947 Male, age 18, unknown 24.1
1795 Male, age 51, unknown 21.5
Periaquaductal grey, dorsal
nTPM: 21.2
1831 Male, age 72, unknown 27.6
2464 Female, age 72, unknown 19.6
2850 Male, age 76, both hemispheres 19.4
1840 Male, age 53, unknown 18.4
Periaquaductal grey, lateral
nTPM: 24.0
2272 Male, age 74, both hemispheres 31.1
2140 Male, age 76, both hemispheres 20.5
2053 Male, age 18, unknown 20.4
Pretectal area
nTPM: 23.1
2273 Male, age 74, both hemispheres 28.2
2224 Female, age 72, unknown 25.1
2316 Male, age 76, right hemisphere 24.3
1815 Male, age 53, unknown 24.1
2407 Male, age 75, both hemispheres 23.8
1944 Female, age 72, unknown 22.8
2007 Male, age 72, unknown 22.0
1817 Female, age 42, unknown 21.6
2825 Male, age 18, unknown 21.5
2667 Female, age 75, unknown 21.1
1816 Male, age 51, unknown 19.8
Red nucleus
nTPM: 23.2
2823 Male, age 76, right hemisphere 29.8
1821 Female, age 72, unknown 25.8
2503 Female, age 72, unknown 25.3
1865 Male, age 51, unknown 24.9
1954 Female, age 42, unknown 24.9
2725 Female, age 75, unknown 22.8
2769 Male, age 72, unknown 22.6
1904 Male, age 53, unknown 22.2
2227 Male, age 72, unknown 21.5
2785 Male, age 18, unknown 20.7
2588 Male, age 74, left hemisphere 19.9
2584 Male, age 75, left hemisphere 18.3
Substantia nigra
nTPM: 30.6
2699 Male, age 18, unknown 39.4
2590 Female, age 75, unknown 36.2
1851 Male, age 51, unknown 34.7
1916 Female, age 42, unknown 31.1
2241 Male, age 72, unknown 30.9
2665 Male, age 74, both hemispheres 30.1
2409 Female, age 72, unknown 29.8
1941 Male, age 53, unknown 29.5
2583 Male, age 75, right hemisphere 23.9
1889 Female, age 72, unknown 20.1
Superior colliculus
nTPM: 22.5
2587 Male, age 74, left hemisphere 25.0
2087 Female, age 72, unknown 24.1
1895 Male, age 76, right hemisphere 23.9
1913 Female, age 42, unknown 23.8
1995 Male, age 72, unknown 23.4
1839 Male, age 51, unknown 22.8
1796 Male, age 53, unknown 22.3
2261 Male, age 18, unknown 20.1
2664 Male, age 75, both hemispheres 19.8
2668 Female, age 75, unknown 19.7
Ventral tegmental area
nTPM: 25.8
2021 Male, age 53, unknown 28.2
1915 Female, age 42, unknown 27.1
2218 Male, age 76, both hemispheres 25.4
2410 Female, age 72, unknown 25.3
1942 Male, age 51, unknown 24.8
2223 Female, age 72, unknown 23.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.9
Samples: 139

Max nTPM: 53.1
Min nTPM: 5.4
Std nTPM: 7.9
Median nTPM: 14.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 53.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 44.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 44.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 38.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 36.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 32.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 31.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 31.4
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 31.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 30.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 29.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.1
FF:10158-103A5 76 years, female 92.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.4
Samples: 4

Max nTPM: 23.3
Min nTPM: 14.9
Sample A Female 21.1
Sample B Female 22.2
Sample C Male 23.3
Sample D Male 14.9
Midbrain
nTPM: 18.3
Samples: 4

Max nTPM: 20.2
Min nTPM: 14.7
Sample A Female 14.7
Sample B Female 20.2
Sample C Male 19.0
Sample D Male 19.3
Periaqueductal gray
nTPM: 17.4
Samples: 3

Max nTPM: 18.6
Min nTPM: 16.7
Sample B Female 16.9
Sample C Male 18.6
Sample D Male 16.7
Superior colliculi
nTPM: 19.2
Samples: 4

Max nTPM: 20.0
Min nTPM: 18.6
Sample A Female 18.6
Sample B Female 19.7
Sample C Male 20.0
Sample D Male 18.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.8
Samples: 4

Max nTPM: 10.1
Min nTPM: 9.1
Sample A Male 10.0
Sample B Male 9.1
Sample C Female 9.9
Sample D Female 10.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
75694483 Antisense, RP_060518_03_G12, Mouse strain C57BL/6J (56 days, male) 0.6

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