MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.3 nTPM
HPA Brain:36.5 nTPM
GTEx:22.3 nTPM
FANTOM5:42.5 Scaled Tags Per Million
Pig:36.1 nTPM
Mouse:81.8 nTPM
Allen mouse:7.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.6
1870 Female, age 42, unknown 33.8
1827 Male, age 72, unknown 32.3
2219 Male, age 76, both hemispheres 30.7
1833 Male, age 53, unknown 29.8
2411 Female, age 72, unknown 29.8
2019 Male, age 18, unknown 28.2
1830 Male, age 51, unknown 27.9
2828 Female, age 72, unknown 25.2
2586 Male, age 75, left hemisphere 24.4
2666 Male, age 74, left hemisphere 24.3
Dorsal raphe nucleus
nTPM: 31.5
2298 Female, age 72, unknown 37.2
2750 Male, age 76, both hemispheres 34.5
2047 Male, age 72, unknown 31.5
1828 Male, age 53, unknown 27.7
2016 Female, age 72, unknown 26.7
Inferior colliculus
nTPM: 30.8
2849 Male, age 72, unknown 34.2
2097 Female, age 72, unknown 30.7
1848 Female, age 42, unknown 29.8
1890 Male, age 53, unknown 28.7
Median raphe nucleus
nTPM: 36.5
2220 Male, age 76, midline 36.5
Periaquaductal grey, anterior
nTPM: 29.1
1947 Male, age 18, unknown 29.9
2502 Female, age 75, unknown 29.1
1795 Male, age 51, unknown 28.2
Periaquaductal grey, dorsal
nTPM: 30.2
1840 Male, age 53, unknown 34.2
2850 Male, age 76, both hemispheres 32.6
2464 Female, age 72, unknown 27.0
1831 Male, age 72, unknown 26.9
Periaquaductal grey, lateral
nTPM: 30.4
2140 Male, age 76, both hemispheres 32.2
2272 Male, age 74, both hemispheres 31.7
2053 Male, age 18, unknown 27.2
Pretectal area
nTPM: 30.7
2224 Female, age 72, unknown 35.6
2007 Male, age 72, unknown 33.2
1944 Female, age 72, unknown 31.4
2825 Male, age 18, unknown 31.4
1816 Male, age 51, unknown 30.9
1817 Female, age 42, unknown 30.2
2667 Female, age 75, unknown 30.1
2316 Male, age 76, right hemisphere 29.5
1815 Male, age 53, unknown 28.9
2273 Male, age 74, both hemispheres 28.3
2407 Male, age 75, both hemispheres 28.0
Red nucleus
nTPM: 28.9
2725 Female, age 75, unknown 35.9
1821 Female, age 72, unknown 31.0
1954 Female, age 42, unknown 30.1
2588 Male, age 74, left hemisphere 30.0
1904 Male, age 53, unknown 28.7
2503 Female, age 72, unknown 28.2
2823 Male, age 76, right hemisphere 28.2
1865 Male, age 51, unknown 27.9
2785 Male, age 18, unknown 27.3
2227 Male, age 72, unknown 27.1
2584 Male, age 75, left hemisphere 26.3
2769 Male, age 72, unknown 25.8
Substantia nigra
nTPM: 31.7
2241 Male, age 72, unknown 37.2
1916 Female, age 42, unknown 36.9
1941 Male, age 53, unknown 35.1
1851 Male, age 51, unknown 33.3
1889 Female, age 72, unknown 33.2
2699 Male, age 18, unknown 33.1
2409 Female, age 72, unknown 28.6
2590 Female, age 75, unknown 27.7
2665 Male, age 74, both hemispheres 27.1
2583 Male, age 75, right hemisphere 25.1
Superior colliculus
nTPM: 28.5
1895 Male, age 76, right hemisphere 35.5
1796 Male, age 53, unknown 30.3
1839 Male, age 51, unknown 30.2
2261 Male, age 18, unknown 30.1
2587 Male, age 74, left hemisphere 30.1
2087 Female, age 72, unknown 29.1
1913 Female, age 42, unknown 28.3
2668 Female, age 75, unknown 26.1
1995 Male, age 72, unknown 22.8
2664 Male, age 75, both hemispheres 22.6
Ventral tegmental area
nTPM: 30.8
2410 Female, age 72, unknown 33.1
1915 Female, age 42, unknown 32.9
2218 Male, age 76, both hemispheres 32.8
1942 Male, age 51, unknown 29.3
2223 Female, age 72, unknown 29.0
2021 Male, age 53, unknown 27.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.3
Samples: 139

Max nTPM: 43.0
Min nTPM: 9.7
Std nTPM: 5.5
Median nTPM: 21.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 43.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 37.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 37.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 34.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 33.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 33.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 33.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 31.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 31.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 30.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 30.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.5
FF:10158-103A5 76 years, female 42.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.4
Samples: 4

Max nTPM: 37.0
Min nTPM: 31.3
Sample A Female 37.0
Sample B Female 31.3
Sample C Male 33.7
Sample D Male 35.7
Midbrain
nTPM: 36.1
Samples: 4

Max nTPM: 43.1
Min nTPM: 31.6
Sample A Female 43.1
Sample B Female 31.6
Sample C Male 32.9
Sample D Male 36.8
Periaqueductal gray
nTPM: 30.4
Samples: 3

Max nTPM: 32.3
Min nTPM: 28.9
Sample B Female 30.1
Sample C Male 32.3
Sample D Male 28.9
Superior colliculi
nTPM: 35.8
Samples: 4

Max nTPM: 38.9
Min nTPM: 31.5
Sample A Female 38.9
Sample B Female 31.5
Sample C Male 35.9
Sample D Male 36.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 81.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.8
Samples: 4

Max nTPM: 84.3
Min nTPM: 79.3
Sample A Male 79.3
Sample B Male 84.3
Sample C Female 83.1
Sample D Female 80.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
68193039 Antisense, RP_040825_02_A04, Mouse strain C57BL/6J (56 days, male) 7.6

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