MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.1 nTPM
HPA Brain:30.8 nTPM
GTEx:7.1 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:32.2 nTPM
Mouse:16.1 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.3
1833 Male, age 53, unknown 35.0
1830 Male, age 51, unknown 32.7
2411 Female, age 72, unknown 31.4
2019 Male, age 18, unknown 30.0
1870 Female, age 42, unknown 29.2
1827 Male, age 72, unknown 28.1
2666 Male, age 74, left hemisphere 27.5
2828 Female, age 72, unknown 26.6
2219 Male, age 76, both hemispheres 26.3
2586 Male, age 75, left hemisphere 26.1
Dorsal raphe nucleus
nTPM: 28.7
2750 Male, age 76, both hemispheres 31.7
2016 Female, age 72, unknown 31.4
1828 Male, age 53, unknown 29.3
2047 Male, age 72, unknown 25.8
2298 Female, age 72, unknown 25.1
Inferior colliculus
nTPM: 29.1
1848 Female, age 42, unknown 29.9
2097 Female, age 72, unknown 29.3
1890 Male, age 53, unknown 29.2
2849 Male, age 72, unknown 27.9
Median raphe nucleus
nTPM: 30.5
2220 Male, age 76, midline 30.5
Periaquaductal grey, anterior
nTPM: 23.3
1947 Male, age 18, unknown 23.6
1795 Male, age 51, unknown 23.2
2502 Female, age 75, unknown 23.2
Periaquaductal grey, dorsal
nTPM: 29.7
2850 Male, age 76, both hemispheres 32.1
1840 Male, age 53, unknown 29.3
1831 Male, age 72, unknown 28.7
2464 Female, age 72, unknown 28.6
Periaquaductal grey, lateral
nTPM: 29.8
2140 Male, age 76, both hemispheres 32.3
2053 Male, age 18, unknown 30.0
2272 Male, age 74, both hemispheres 27.0
Pretectal area
nTPM: 27.5
2316 Male, age 76, right hemisphere 34.1
2667 Female, age 75, unknown 28.6
2224 Female, age 72, unknown 28.3
2407 Male, age 75, both hemispheres 28.3
2825 Male, age 18, unknown 28.1
1944 Female, age 72, unknown 27.0
2007 Male, age 72, unknown 27.0
1817 Female, age 42, unknown 26.7
1815 Male, age 53, unknown 26.6
2273 Male, age 74, both hemispheres 25.3
1816 Male, age 51, unknown 22.6
Red nucleus
nTPM: 30.8
2823 Male, age 76, right hemisphere 39.4
1865 Male, age 51, unknown 33.6
2503 Female, age 72, unknown 31.4
1821 Female, age 72, unknown 30.3
2588 Male, age 74, left hemisphere 30.2
2769 Male, age 72, unknown 30.2
2584 Male, age 75, left hemisphere 30.0
2227 Male, age 72, unknown 29.3
1954 Female, age 42, unknown 29.1
1904 Male, age 53, unknown 29.0
2725 Female, age 75, unknown 28.9
2785 Male, age 18, unknown 27.6
Substantia nigra
nTPM: 29.0
2241 Male, age 72, unknown 35.1
2409 Female, age 72, unknown 34.8
2699 Male, age 18, unknown 29.8
1916 Female, age 42, unknown 29.4
2590 Female, age 75, unknown 29.1
1851 Male, age 51, unknown 27.4
2665 Male, age 74, both hemispheres 27.1
1889 Female, age 72, unknown 26.6
1941 Male, age 53, unknown 26.0
2583 Male, age 75, right hemisphere 24.9
Superior colliculus
nTPM: 28.9
1913 Female, age 42, unknown 33.3
1995 Male, age 72, unknown 31.4
1895 Male, age 76, right hemisphere 30.4
2587 Male, age 74, left hemisphere 30.2
2668 Female, age 75, unknown 29.0
2261 Male, age 18, unknown 28.8
1839 Male, age 51, unknown 28.0
1796 Male, age 53, unknown 26.7
2087 Female, age 72, unknown 26.1
2664 Male, age 75, both hemispheres 25.2
Ventral tegmental area
nTPM: 29.2
1942 Male, age 51, unknown 31.3
2021 Male, age 53, unknown 31.1
2218 Male, age 76, both hemispheres 30.4
1915 Female, age 42, unknown 29.3
2223 Female, age 72, unknown 28.2
2410 Female, age 72, unknown 25.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.1
Samples: 139

Max nTPM: 10.1
Min nTPM: 4.8
Std nTPM: 1.1
Median nTPM: 7.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 10.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 9.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 9.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 9.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 9.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 9.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 9.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 8.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 8.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 8.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 8.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.2
FF:10158-103A5 76 years, female 29.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.4
Samples: 4

Max nTPM: 33.3
Min nTPM: 30.2
Sample A Female 31.2
Sample B Female 30.8
Sample C Male 33.3
Sample D Male 30.2
Midbrain
nTPM: 31.5
Samples: 4

Max nTPM: 36.4
Min nTPM: 26.4
Sample A Female 36.4
Sample B Female 32.3
Sample C Male 26.4
Sample D Male 30.9
Periaqueductal gray
nTPM: 32.2
Samples: 3

Max nTPM: 33.9
Min nTPM: 29.8
Sample B Female 33.9
Sample C Male 32.9
Sample D Male 29.8
Superior colliculi
nTPM: 30.5
Samples: 4

Max nTPM: 36.0
Min nTPM: 26.8
Sample A Female 36.0
Sample B Female 31.0
Sample C Male 26.8
Sample D Male 28.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.1
Samples: 4

Max nTPM: 17.8
Min nTPM: 14.7
Sample A Male 17.8
Sample B Male 14.7
Sample C Female 17.0
Sample D Female 14.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
70523835 Antisense, RP_050309_02_G09, Mouse strain C57BL/6J (56 days, male) 2.4

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