MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.9 nTPM
HPA Brain:56.2 nTPM
GTEx:61.9 nTPM
FANTOM5:52.0 Scaled Tags Per Million
Pig:44.1 nTPM
Mouse:25.9 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.0
2411 Female, age 72, unknown 56.4
1870 Female, age 42, unknown 49.3
1827 Male, age 72, unknown 45.8
1833 Male, age 53, unknown 44.2
1830 Male, age 51, unknown 40.2
2828 Female, age 72, unknown 40.2
2219 Male, age 76, both hemispheres 36.0
2019 Male, age 18, unknown 33.9
2666 Male, age 74, left hemisphere 33.9
2586 Male, age 75, left hemisphere 29.6
Dorsal raphe nucleus
nTPM: 50.8
2298 Female, age 72, unknown 62.2
2750 Male, age 76, both hemispheres 52.3
2047 Male, age 72, unknown 49.8
2016 Female, age 72, unknown 45.5
1828 Male, age 53, unknown 44.1
Inferior colliculus
nTPM: 41.3
2097 Female, age 72, unknown 45.7
1848 Female, age 42, unknown 41.5
2849 Male, age 72, unknown 40.4
1890 Male, age 53, unknown 37.8
Median raphe nucleus
nTPM: 56.2
2220 Male, age 76, midline 56.2
Periaquaductal grey, anterior
nTPM: 44.0
1947 Male, age 18, unknown 51.8
2502 Female, age 75, unknown 40.5
1795 Male, age 51, unknown 39.8
Periaquaductal grey, dorsal
nTPM: 43.3
1840 Male, age 53, unknown 53.3
2850 Male, age 76, both hemispheres 44.1
2464 Female, age 72, unknown 41.0
1831 Male, age 72, unknown 34.6
Periaquaductal grey, lateral
nTPM: 39.9
2053 Male, age 18, unknown 41.4
2272 Male, age 74, both hemispheres 39.9
2140 Male, age 76, both hemispheres 38.3
Pretectal area
nTPM: 41.5
2224 Female, age 72, unknown 54.9
2825 Male, age 18, unknown 49.6
2273 Male, age 74, both hemispheres 47.5
2667 Female, age 75, unknown 45.5
1815 Male, age 53, unknown 38.4
1817 Female, age 42, unknown 38.2
2007 Male, age 72, unknown 37.8
2316 Male, age 76, right hemisphere 37.8
1944 Female, age 72, unknown 36.8
1816 Male, age 51, unknown 35.9
2407 Male, age 75, both hemispheres 34.2
Red nucleus
nTPM: 37.6
1821 Female, age 72, unknown 49.8
2725 Female, age 75, unknown 42.6
1954 Female, age 42, unknown 39.4
1865 Male, age 51, unknown 38.7
2769 Male, age 72, unknown 38.3
1904 Male, age 53, unknown 37.9
2823 Male, age 76, right hemisphere 36.8
2227 Male, age 72, unknown 36.5
2503 Female, age 72, unknown 35.9
2584 Male, age 75, left hemisphere 32.4
2588 Male, age 74, left hemisphere 31.8
2785 Male, age 18, unknown 31.7
Substantia nigra
nTPM: 44.2
2241 Male, age 72, unknown 60.9
1916 Female, age 42, unknown 52.9
1851 Male, age 51, unknown 49.9
2699 Male, age 18, unknown 46.4
1889 Female, age 72, unknown 45.1
1941 Male, age 53, unknown 42.7
2409 Female, age 72, unknown 42.7
2590 Female, age 75, unknown 35.7
2583 Male, age 75, right hemisphere 34.1
2665 Male, age 74, both hemispheres 31.6
Superior colliculus
nTPM: 38.6
2587 Male, age 74, left hemisphere 46.8
1839 Male, age 51, unknown 44.9
1895 Male, age 76, right hemisphere 43.0
1796 Male, age 53, unknown 40.4
2668 Female, age 75, unknown 39.8
1913 Female, age 42, unknown 37.3
2087 Female, age 72, unknown 35.8
2261 Male, age 18, unknown 33.6
1995 Male, age 72, unknown 33.1
2664 Male, age 75, both hemispheres 31.6
Ventral tegmental area
nTPM: 46.2
2410 Female, age 72, unknown 53.4
1915 Female, age 42, unknown 49.5
2218 Male, age 76, both hemispheres 45.5
2223 Female, age 72, unknown 44.8
2021 Male, age 53, unknown 42.7
1942 Male, age 51, unknown 41.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.9
Samples: 139

Max nTPM: 90.7
Min nTPM: 40.7
Std nTPM: 9.8
Median nTPM: 61.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 90.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 88.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 88.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 83.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 82.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 82.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 79.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 78.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 77.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 77.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 75.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.0
FF:10158-103A5 76 years, female 52.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.1
Samples: 4

Max nTPM: 64.0
Min nTPM: 19.6
Sample A Female 64.0
Sample B Female 37.4
Sample C Male 55.5
Sample D Male 19.6
Midbrain
nTPM: 37.7
Samples: 4

Max nTPM: 42.2
Min nTPM: 31.2
Sample A Female 31.2
Sample B Female 42.2
Sample C Male 36.0
Sample D Male 41.5
Periaqueductal gray
nTPM: 40.0
Samples: 3

Max nTPM: 48.1
Min nTPM: 35.2
Sample B Female 36.8
Sample C Male 48.1
Sample D Male 35.2
Superior colliculi
nTPM: 33.6
Samples: 4

Max nTPM: 40.9
Min nTPM: 23.4
Sample A Female 40.9
Sample B Female 23.4
Sample C Male 37.3
Sample D Male 32.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 26.9
Min nTPM: 24.2
Sample A Male 26.4
Sample B Male 26.9
Sample C Female 24.2
Sample D Female 26.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68637455 Antisense, RP_050125_02_H11, Mouse strain C57BL/6J (56 days, male) 0.5

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