MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.7 nTPM
HPA Brain:23.2 nTPM
GTEx:10.7 nTPM
FANTOM5:62.5 Scaled Tags Per Million
Pig:34.2 nTPM
Mouse:3.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.0
1833 Male, age 53, unknown 23.0
1830 Male, age 51, unknown 21.6
1870 Female, age 42, unknown 20.0
2219 Male, age 76, both hemispheres 19.9
2411 Female, age 72, unknown 19.8
2019 Male, age 18, unknown 19.3
2828 Female, age 72, unknown 17.2
2666 Male, age 74, left hemisphere 15.8
1827 Male, age 72, unknown 15.5
2586 Male, age 75, left hemisphere 7.9
Dorsal raphe nucleus
nTPM: 18.1
2016 Female, age 72, unknown 20.5
2750 Male, age 76, both hemispheres 20.3
2298 Female, age 72, unknown 18.0
1828 Male, age 53, unknown 16.5
2047 Male, age 72, unknown 15.4
Inferior colliculus
nTPM: 20.5
1848 Female, age 42, unknown 21.8
2097 Female, age 72, unknown 21.5
2849 Male, age 72, unknown 19.7
1890 Male, age 53, unknown 19.0
Median raphe nucleus
nTPM: 20.2
2220 Male, age 76, midline 20.2
Periaquaductal grey, anterior
nTPM: 17.0
1947 Male, age 18, unknown 18.8
2502 Female, age 75, unknown 17.7
1795 Male, age 51, unknown 14.5
Periaquaductal grey, dorsal
nTPM: 20.2
2850 Male, age 76, both hemispheres 24.3
2464 Female, age 72, unknown 21.4
1831 Male, age 72, unknown 18.5
1840 Male, age 53, unknown 16.6
Periaquaductal grey, lateral
nTPM: 23.2
2272 Male, age 74, both hemispheres 26.2
2140 Male, age 76, both hemispheres 23.6
2053 Male, age 18, unknown 19.7
Pretectal area
nTPM: 18.6
2273 Male, age 74, both hemispheres 23.4
2224 Female, age 72, unknown 22.9
2825 Male, age 18, unknown 21.2
2316 Male, age 76, right hemisphere 20.5
2407 Male, age 75, both hemispheres 19.2
1815 Male, age 53, unknown 18.2
1817 Female, age 42, unknown 17.4
1816 Male, age 51, unknown 15.7
2007 Male, age 72, unknown 15.7
1944 Female, age 72, unknown 15.6
2667 Female, age 75, unknown 15.2
Red nucleus
nTPM: 19.3
1865 Male, age 51, unknown 23.2
1954 Female, age 42, unknown 21.9
1904 Male, age 53, unknown 21.0
2785 Male, age 18, unknown 21.0
2823 Male, age 76, right hemisphere 21.0
2227 Male, age 72, unknown 20.0
1821 Female, age 72, unknown 19.9
2769 Male, age 72, unknown 19.6
2725 Female, age 75, unknown 18.7
2503 Female, age 72, unknown 18.1
2588 Male, age 74, left hemisphere 15.3
2584 Male, age 75, left hemisphere 12.2
Substantia nigra
nTPM: 18.4
2409 Female, age 72, unknown 25.0
2241 Male, age 72, unknown 24.8
2590 Female, age 75, unknown 20.4
2665 Male, age 74, both hemispheres 19.4
2699 Male, age 18, unknown 18.2
1941 Male, age 53, unknown 17.0
2583 Male, age 75, right hemisphere 16.9
1889 Female, age 72, unknown 15.0
1851 Male, age 51, unknown 14.8
1916 Female, age 42, unknown 12.4
Superior colliculus
nTPM: 18.0
1913 Female, age 42, unknown 21.0
1995 Male, age 72, unknown 20.8
2587 Male, age 74, left hemisphere 20.3
1895 Male, age 76, right hemisphere 20.2
1839 Male, age 51, unknown 19.3
2668 Female, age 75, unknown 18.4
2087 Female, age 72, unknown 18.3
1796 Male, age 53, unknown 16.3
2261 Male, age 18, unknown 13.1
2664 Male, age 75, both hemispheres 12.2
Ventral tegmental area
nTPM: 17.7
2021 Male, age 53, unknown 20.2
2223 Female, age 72, unknown 19.1
1942 Male, age 51, unknown 17.9
2218 Male, age 76, both hemispheres 17.1
2410 Female, age 72, unknown 16.1
1915 Female, age 42, unknown 16.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.7
Samples: 139

Max nTPM: 24.0
Min nTPM: 3.7
Std nTPM: 3.8
Median nTPM: 10.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 24.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 22.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 19.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 19.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 19.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 19.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 19.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 18.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 18.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 17.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 17.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.5
FF:10158-103A5 76 years, female 62.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.4
Samples: 4

Max nTPM: 31.0
Min nTPM: 22.9
Sample A Female 22.9
Sample B Female 25.5
Sample C Male 30.2
Sample D Male 31.0
Midbrain
nTPM: 30.6
Samples: 4

Max nTPM: 35.1
Min nTPM: 21.0
Sample A Female 21.0
Sample B Female 33.4
Sample C Male 32.9
Sample D Male 35.1
Periaqueductal gray
nTPM: 34.1
Samples: 3

Max nTPM: 36.3
Min nTPM: 31.4
Sample B Female 34.7
Sample C Male 31.4
Sample D Male 36.3
Superior colliculi
nTPM: 28.3
Samples: 4

Max nTPM: 33.2
Min nTPM: 23.1
Sample A Female 24.2
Sample B Female 23.1
Sample C Male 32.5
Sample D Male 33.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.9
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.2
Sample A Male 4.6
Sample B Male 3.8
Sample C Female 4.0
Sample D Female 3.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73617636 Antisense, RP_051130_02_B11, Mouse strain C57BL/6J (56 days, male) 0.0

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